Basic information   
Locus name AT5G54860
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryOthers
Effect for Senescenceunclear
Gene Descriptionintegral membrane transporter family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: integral membrane transporter family protein (TAIR:AT1G64890.1); Has 636 Blast hits to 542 proteins in 109 species: Archae - 2; Bacteria - 124; Metazoa - 4; Fungi - 2; Plants - 156; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

SequenceAT5G54860.1 | Genomic | mRNA | CDS | Protein
Ortholog Group      
Ortholog Groups: OG5_153382
AccessionTaxon
NP_200297 ( AT5G54860 ) Arabidopsis thaliana
NP_564843Arabidopsis thaliana
NP_001042562Oryza sativa Japonica Group
NP_001055433Oryza sativa Japonica Group
e_gw1.19.70.1Physcomitrella patens subsp. patens
estExt_Genewise1.C_2300023Physcomitrella patens subsp. patens
gw1.28.338.1Physcomitrella patens subsp. patens
29666.m001458Ricinus communis
30148.m001473Ricinus communis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR315856.8E-1471487No hitNA
SUPERFAMILYSSF1034737.3E-3717215IPR016196Major facilitator superfamily domain, general substrate transporter
TIGRFAMTIGR007885.4E-8019483IPR004324Biopterin transport-related protein BT1
PfamPF030925.4E-9327485IPR004324Biopterin transport-related protein BT1
SUPERFAMILYSSF1034737.3E-37272483IPR016196Major facilitator superfamily domain, general substrate transporter