Basic information
Locus name	AT4G39580
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	kelch repeat-containing F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39550.1); Has 6715 Blast hits to 3439 proteins in 186 species: Archae - 12; Bacteria - 323; Metazoa - 5315; Fungi - 6; Plants - 746; Viruses - 74; Other Eukaryotes - 239 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function protein binding
Sequence	AT4G39580.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_131656	Accession Taxon NP_001119398 Arabidopsis thaliana NP_173422 Arabidopsis thaliana NP_176257 Arabidopsis thaliana NP_176348 Arabidopsis thaliana NP_178445 Arabidopsis thaliana NP_179628 Arabidopsis thaliana NP_187493 Arabidopsis thaliana NP_189957 Arabidopsis thaliana NP_192912 Arabidopsis thaliana NP_192914 Arabidopsis thaliana NP_193660 Arabidopsis thaliana NP_193722 Arabidopsis thaliana NP_194089 Arabidopsis thaliana NP_194301 Arabidopsis thaliana NP_194666 Arabidopsis thaliana NP_195143 Arabidopsis thaliana NP_195238 Arabidopsis thaliana NP_195617 Arabidopsis thaliana NP_195640 Arabidopsis thaliana NP_195665 Arabidopsis thaliana NP_195666 Arabidopsis thaliana NP_195667 Arabidopsis thaliana NP_195668 ( AT4G39580 ) Arabidopsis thaliana NP_195670 Arabidopsis thaliana NP_195686 Arabidopsis thaliana NP_198168 Arabidopsis thaliana NP_198170 Arabidopsis thaliana NP_198683 Arabidopsis thaliana NP_198684 Arabidopsis thaliana NP_198772 Arabidopsis thaliana NP_199709 Arabidopsis thaliana NP_199710 Arabidopsis thaliana NP_199711 Arabidopsis thaliana NP_199938 Arabidopsis thaliana NP_566286 Arabidopsis thaliana NP_567939 Arabidopsis thaliana NP_568062 Arabidopsis thaliana NP_568070 Arabidopsis thaliana NP_568071 Arabidopsis thaliana NP_849360 Arabidopsis thaliana NP_849411 Arabidopsis thaliana NP_849547 Arabidopsis thaliana NP_974716 Arabidopsis thaliana
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR32188 2.3E-91 5 375 No hit NA Pfam PF00646 1.7E-5 26 66 IPR001810 F-box domain, cyclin-like SMART SM00256 0.0 26 66 IPR001810 F-box domain, cyclin-like SUPERFAMILY SSF117281 2.0E-46 73 358 No hit NA Pfam PF01344 2.2E-7 125 165 IPR006652 Kelch repeat type 1 SMART SM00612 1.7E-6 132 178 IPR006652 Kelch repeat type 1 Pfam PF01344 8.2E-13 167 211 IPR006652 Kelch repeat type 1 SMART SM00612 0.7 179 228 IPR006652 Kelch repeat type 1