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Locus name | AT3G12120 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Lipid/Carbohydrate metabolism:Lipid metabolism |
Effect for Senescence | Unclear |
Gene Description | Omega-6 fatty acid desaturase. Upregulated in senescent leaves. |
Evidence | Molecular evidence: SSH and Northern [Ref 1] |
References | 1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani MLarge-scale identification of leaf senescence-associated genes.Plant J. 2003 Dec;36(5):629-42 |
Gene Ontology | |
Pathway | |
Sequence | AT3G12120.1 | Genomic | mRNA | CDS | Protein AT3G12120.2 | Genomic | mRNA | CDS | Protein
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miRNA Interaction | |
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Details | | target: AT3G12120.1 miRNA: ath-miR157a miRNA: ath-miR157a mfe: -24.8 kcal/mol p-value: 0.010818
position: 1361 target 5' U U G A 3' UG CU UUUGUCUUUUGUUAA AC GA AGAUAGAAGACAGUU miRNA 3' C G 5'
target: AT3G12120.1 miRNA: ath-miR157b miRNA: ath-miR157b mfe: -24.8 kcal/mol p-value: 0.010635
position: 1361 target 5' U U G A 3' UG CU UUUGUCUUUUGUUAA AC GA AGAUAGAAGACAGUU miRNA 3' C G 5'
target: AT3G12120.1 miRNA: ath-miR157c miRNA: ath-miR157c mfe: -24.8 kcal/mol p-value: 0.010268
position: 1361 target 5' U U G A 3' UG CU UUUGUCUUUUGUUAA AC GA AGAUAGAAGACAGUU miRNA 3' C G 5'
target: AT3G12120.1 miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -21.6 kcal/mol p-value: 0.108701
position: 1271 target 5' A C A G C 3' GAA CGGACAGGG AG UGA CUU GCUUGUUCU UU ACU miRNA 3' A U G A 5'
target: AT3G12120.2 miRNA: ath-miR157a miRNA: ath-miR157a mfe: -24.8 kcal/mol p-value: 0.009459
position: 1322 target 5' U U G A 3' UG CU UUUGUCUUUUGUUAA AC GA AGAUAGAAGACAGUU miRNA 3' C G 5'
target: AT3G12120.2 miRNA: ath-miR157b miRNA: ath-miR157b mfe: -24.8 kcal/mol p-value: 0.009219
position: 1322 target 5' U U G A 3' UG CU UUUGUCUUUUGUUAA AC GA AGAUAGAAGACAGUU miRNA 3' C G 5'
target: AT3G12120.2 miRNA: ath-miR157c miRNA: ath-miR157c mfe: -24.8 kcal/mol p-value: 0.008603
position: 1322 target 5' U U G A 3' UG CU UUUGUCUUUUGUUAA AC GA AGAUAGAAGACAGUU miRNA 3' C G 5'
target: AT3G12120.2 miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -21.6 kcal/mol p-value: 0.096045
position: 1232 target 5' A C A G C 3' GAA CGGACAGGG AG UGA CUU GCUUGUUCU UU ACU miRNA 3' A U G A 5'
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Ortholog Group | |
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Ortholog Groups: OG5_129048 | |
Cross Link | |
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Localization | endoplasmic reticulum |
Evidence | SUBAcon |
Pubmed ID | 23180787 |