Basic information
Locus name	AT4G00780
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	meprin and TRAF homology domain-containing protein / MATH domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01390.1); Has 394 Blast hits to 352 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 375; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function protein binding
Sequence	AT4G00780.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_177710	Accession Taxon NP_180846 Arabidopsis thaliana NP_180847 Arabidopsis thaliana NP_192048 Arabidopsis thaliana NP_567187 ( AT4G00780 ) Arabidopsis thaliana
Cross Link
Database Entry ID E-value Start End InterPro ID Description ProSiteProfiles PS50144 20.7 19 142 IPR002083 MATH SUPERFAMILY SSF49599 2.0E-28 19 147 IPR008974 TRAF-like SMART SM00061 5.9E-9 24 125 IPR002083 MATH Pfam PF00917 7.0E-5 26 140 IPR002083 MATH ProSiteProfiles PS50144 24.2 164 290 IPR002083 MATH SUPERFAMILY SSF49599 2.9E-28 164 294 IPR008974 TRAF-like SMART SM00061 3.8E-14 166 274 IPR002083 MATH PANTHER PTHR24006 4.7E-113 171 299 No hit NA Pfam PF00917 3.7E-6 173 292 IPR002083 MATH