Basic information
Locus name	AT4G00560
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	methionine adenosyltransferase regulatory beta subunit-related; FUNCTIONS IN: dTDP-4-dehydrorhamnose reductase activity, binding, catalytic activity; INVOLVED IN: dTDP-rhamnose biosynthetic process, extracellular polysaccharide biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding (InterPro:IPR016040), dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913); Has 5283 Blast hits to 5283 proteins in 1010 species: Archae - 187; Bacteria - 2829; Metazoa - 101; Fungi - 79; Plants - 23; Viruses - 0; Other Eukaryotes - 2064 (source: NCBI BLink).
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process extracellular polysaccharide biosynthetic process molecular function dTDP-4-dehydrorhamnose reductase activity
Sequence	AT4G00560.1 | Genomic | mRNA | CDS | Protein AT4G00560.2 | Genomic | mRNA | CDS | Protein AT4G00560.3 | Genomic | mRNA | CDS | Protein AT4G00560.4 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128895	Accession Taxon NP_191965 ( AT4G00560 ) Arabidopsis thaliana NP_974491 Arabidopsis thaliana NP_974492 Arabidopsis thaliana CMC049C Cyanidioschyzon merolae strain 10D 123563 Chlamydomonas reinhardtii ACO69886 Micromonas sp. RCC299 NP_001048585 Oryza sativa Japonica Group 1800010008 Ostreococcus tauri estExt_fgenesh1_pg.C_140177 Physcomitrella patens subsp. patens 30174.m008986 Ricinus communis 34153.m000024 Ricinus communis fgenesh1_pg.C_chr_11b000010 Thalassiosira pseudonana CCMP1335 XP_002949725 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10491 1.3E-92 1 238 No hit NA Pfam PF04321 9.9E-32 6 247 IPR005913 dTDP-4-dehydrorhamnose reductase SUPERFAMILY SSF51735 8.4E-43 6 245 No hit NA