Leaf Senescence DataBase

Basic information

Locus name

AT5G12840

Alias

NF-YA1

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Transcription regulation

Effect for Senescence

unclear

Gene Description

NUCLEAR FACTOR Y, SUBUNIT A1 (NF-YA1); FUNCTIONS IN: transcription factor activity; INVOLVED IN: embryonic development ending in seed dormancy, regulation of transcription, DNA-dependent, regulation of timing of transition from vegetative to reproductive phase;

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

biological process	regulation of transcription, DNA-dependent
molecular function	sequence-specific DNA binding transcription factor activity

Sequence

miRNA Interaction

Details

target: AT5G12840.1
miRNA: ath-miR169b
miRNA: ath-miR169b
mfe: -36.9 kcal/mol
p-value: 0.000205

position: 1035
target 5' A       A            U  3'
           CCGGCAA UCAUUCUUGGCU
           GGCCGUU AGUAGGAACCGA
miRNA  3'         C            C  5'

target: AT5G12840.1
miRNA: ath-miR169c
miRNA: ath-miR169c
mfe: -36.9 kcal/mol
p-value: 0.000201

position: 1035
target 5' A       A            U  3'
           CCGGCAA UCAUUCUUGGCU
           GGCCGUU AGUAGGAACCGA
miRNA  3'         C            C  5'

target: AT5G12840.1
miRNA: ath-miR169d
miRNA: ath-miR169d
mfe: -34.6 kcal/mol
p-value: 0.000326

position: 1036
target 5' C      A             U  3'
           CGGCAA UCAUUCUUGGCUU
           GCCGUU AGUAGGAACCGAG
miRNA  3'        C             U  5'

target: AT5G12840.1
miRNA: ath-miR169e
miRNA: ath-miR169e
mfe: -34.6 kcal/mol
p-value: 0.000584

position: 1036
target 5' C      A             U  3'
           CGGCAA UCAUUCUUGGCUU
           GCCGUU AGUAGGAACCGAG
miRNA  3'        C             U  5'

target: AT5G12840.1
miRNA: ath-miR169f
miRNA: ath-miR169f
mfe: -34.6 kcal/mol
p-value: 0.000687

position: 1036
target 5' C      A             U  3'
           CGGCAA UCAUUCUUGGCUU
           GCCGUU AGUAGGAACCGAG
miRNA  3'        C             U  5'

target: AT5G12840.1
miRNA: ath-miR169g-5p
miRNA: ath-miR169g-5p
mfe: -34.6 kcal/mol
p-value: 0.000629

position: 1036
target 5' C      A             U  3'
           CGGCAA UCAUUCUUGGCUU
           GCCGUU AGUAGGAACCGAG
miRNA  3'        C             U  5'

target: AT5G12840.2
miRNA: ath-miR169b
miRNA: ath-miR169b
mfe: -36.9 kcal/mol
p-value: 0.000253

position: 1210
target 5' A       A            U  3'
           CCGGCAA UCAUUCUUGGCU
           GGCCGUU AGUAGGAACCGA
miRNA  3'         C            C  5'

target: AT5G12840.2
miRNA: ath-miR169c
miRNA: ath-miR169c
mfe: -36.9 kcal/mol
p-value: 0.000249

position: 1210
target 5' A       A            U  3'
           CCGGCAA UCAUUCUUGGCU
           GGCCGUU AGUAGGAACCGA
miRNA  3'         C            C  5'

target: AT5G12840.2
miRNA: ath-miR169d
miRNA: ath-miR169d
mfe: -34.6 kcal/mol
p-value: 0.000403

position: 1211
target 5' C      A             U  3'
           CGGCAA UCAUUCUUGGCUU
           GCCGUU AGUAGGAACCGAG
miRNA  3'        C             U  5'

target: AT5G12840.2
miRNA: ath-miR169e
miRNA: ath-miR169e
mfe: -34.6 kcal/mol
p-value: 0.000707

position: 1211
target 5' C      A             U  3'
           CGGCAA UCAUUCUUGGCUU
           GCCGUU AGUAGGAACCGAG
miRNA  3'        C             U  5'

target: AT5G12840.2
miRNA: ath-miR169f
miRNA: ath-miR169f
mfe: -34.6 kcal/mol
p-value: 0.000827

position: 1211
target 5' C      A             U  3'
           CGGCAA UCAUUCUUGGCUU
           GCCGUU AGUAGGAACCGAG
miRNA  3'        C             U  5'

target: AT5G12840.2
miRNA: ath-miR169g-5p
miRNA: ath-miR169g-5p
mfe: -34.6 kcal/mol
p-value: 0.000758

position: 1211
target 5' C      A             U  3'
           CGGCAA UCAUUCUUGGCUU
           GCCGUU AGUAGGAACCGAG
miRNA  3'        C             U  5'

target: AT5G12840.3
miRNA: ath-miR169b
miRNA: ath-miR169b
mfe: -36.9 kcal/mol
p-value: 0.000250

position: 1217
target 5' A       A            U  3'
           CCGGCAA UCAUUCUUGGCU
           GGCCGUU AGUAGGAACCGA
miRNA  3'         C            C  5'

target: AT5G12840.3
miRNA: ath-miR169c
miRNA: ath-miR169c
mfe: -36.9 kcal/mol
p-value: 0.000246

position: 1217
target 5' A       A            U  3'
           CCGGCAA UCAUUCUUGGCU
           GGCCGUU AGUAGGAACCGA
miRNA  3'         C            C  5'

target: AT5G12840.3
miRNA: ath-miR169d
miRNA: ath-miR169d
mfe: -34.6 kcal/mol
p-value: 0.000399

position: 1218
target 5' C      A             U  3'
           CGGCAA UCAUUCUUGGCUU
           GCCGUU AGUAGGAACCGAG
miRNA  3'        C             U  5'

target: AT5G12840.3
miRNA: ath-miR169e
miRNA: ath-miR169e
mfe: -34.6 kcal/mol
p-value: 0.000700

position: 1218
target 5' C      A             U  3'
           CGGCAA UCAUUCUUGGCUU
           GCCGUU AGUAGGAACCGAG
miRNA  3'        C             U  5'

target: AT5G12840.3
miRNA: ath-miR169f
miRNA: ath-miR169f
mfe: -34.6 kcal/mol
p-value: 0.000819

position: 1218
target 5' C      A             U  3'
           CGGCAA UCAUUCUUGGCUU
           GCCGUU AGUAGGAACCGAG
miRNA  3'        C             U  5'

target: AT5G12840.3
miRNA: ath-miR169g-5p
miRNA: ath-miR169g-5p
mfe: -34.6 kcal/mol
p-value: 0.000751

position: 1218
target 5' C      A             U  3'
           CGGCAA UCAUUCUUGGCUU
           GCCGUU AGUAGGAACCGAG
miRNA  3'        C             U  5'

target: AT5G12840.4
miRNA: ath-miR169b
miRNA: ath-miR169b
mfe: -36.9 kcal/mol
p-value: 0.000234

position: 1117
target 5' A       A            U  3'
           CCGGCAA UCAUUCUUGGCU
           GGCCGUU AGUAGGAACCGA
miRNA  3'         C            C  5'

target: AT5G12840.4
miRNA: ath-miR169c
miRNA: ath-miR169c
mfe: -36.9 kcal/mol
p-value: 0.000230

position: 1117
target 5' A       A            U  3'
           CCGGCAA UCAUUCUUGGCU
           GGCCGUU AGUAGGAACCGA
miRNA  3'         C            C  5'

target: AT5G12840.4
miRNA: ath-miR169d
miRNA: ath-miR169d
mfe: -34.6 kcal/mol
p-value: 0.000372

position: 1118
target 5' C      A             U  3'
           CGGCAA UCAUUCUUGGCUU
           GCCGUU AGUAGGAACCGAG
miRNA  3'        C             U  5'

target: AT5G12840.4
miRNA: ath-miR169e
miRNA: ath-miR169e
mfe: -34.6 kcal/mol
p-value: 0.000658

position: 1118
target 5' C      A             U  3'
           CGGCAA UCAUUCUUGGCUU
           GCCGUU AGUAGGAACCGAG
miRNA  3'        C             U  5'

target: AT5G12840.4
miRNA: ath-miR169f
miRNA: ath-miR169f
mfe: -34.6 kcal/mol
p-value: 0.000772

position: 1118
target 5' C      A             U  3'
           CGGCAA UCAUUCUUGGCUU
           GCCGUU AGUAGGAACCGAG
miRNA  3'        C             U  5'

target: AT5G12840.4
miRNA: ath-miR169g-5p
miRNA: ath-miR169g-5p
mfe: -34.6 kcal/mol
p-value: 0.000707

position: 1118
target 5' C      A             U  3'
           CGGCAA UCAUUCUUGGCUU
           GCCGUU AGUAGGAACCGAG
miRNA  3'        C             U  5'

Ortholog Group

Ortholog Groups: OG5_164727

Accession	Taxon
NP_568282	Arabidopsis thaliana
NP_850811	Arabidopsis thaliana
NP_974773 ( AT5G12840 )	Arabidopsis thaliana
NP_974774	Arabidopsis thaliana
NP_001050979	Oryza sativa Japonica Group
30169.m006445	Ricinus communis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR12632	1.5E-69	1	269	IPR001289	CCAAT-binding transcription factor, subunit B
SMART	SM00521	4.4E-34	168	229	IPR001289	CCAAT-binding transcription factor, subunit B
ProSiteProfiles	PS51152	36.2	169	229	IPR001289	CCAAT-binding transcription factor, subunit B
Pfam	PF02045	3.5E-28	170	226	IPR001289	CCAAT-binding transcription factor, subunit B
PRINTS	PR00616	4.0E-23	172	194	IPR001289	CCAAT-binding transcription factor, subunit B
ProSitePatterns	PS00686	NA	174	194	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	4.0E-23	203	226	IPR001289	CCAAT-binding transcription factor, subunit B

Subcellular Localization

Localization

nucleus

Evidence

SUBAcon

Pubmed ID

23180787