Basic information
Locus name	AT3G54230
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	nucleic acid binding / nucleotide binding / zinc ion binding; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	cellular component intracellular molecular function nucleic acid binding zinc ion binding
Sequence	AT3G54230.1 | Genomic | mRNA | CDS | Protein AT3G54230.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_129135	Accession Taxon NP_190991 ( AT3G54230 ) Arabidopsis thaliana 145376 Chlamydomonas reinhardtii ACO66016 Micromonas sp. RCC299 NP_001046007 Oryza sativa Japonica Group estExt_fgenesh1_pg.C_Chr_04.00010003 Ostreococcus tauri estExt_fgenesh1_pg.C_320174 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_40000018 Physcomitrella patens subsp. patens 28611.m000102 Ricinus communis estExt_fgenesh1_pg.C_chr_120105 Thalassiosira pseudonana CCMP1335 XP_002946735 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR13948 0.0 1 1004 No hit NA SUPERFAMILY SSF54928 1.3E-18 265 374 No hit NA ProSiteProfiles PS50102 16.4 272 352 IPR000504 RNA recognition motif domain SMART SM00360 1.5E-15 273 348 IPR000504 RNA recognition motif domain Pfam PF14259 8.9E-15 274 345 No hit NA SUPERFAMILY SSF90209 1.9E-9 370 408 No hit NA ProSiteProfiles PS50199 9.2 378 407 IPR001876 Zinc finger, RanBP2-type SMART SM00547 3.8E-6 380 404 IPR001876 Zinc finger, RanBP2-type ProSitePatterns PS01358 NA 382 401 IPR001876 Zinc finger, RanBP2-type SUPERFAMILY SSF54928 1.1E-23 410 513 No hit NA ProSiteProfiles PS50102 17.2 432 512 IPR000504 RNA recognition motif domain SMART SM00360 4.4E-22 433 508 IPR000504 RNA recognition motif domain Pfam PF00076 6.4E-16 434 498 IPR000504 RNA recognition motif domain SMART SM00443 2.0E-15 926 972 IPR000467 G-patch domain ProSiteProfiles PS50174 16.9 928 974 IPR000467 G-patch domain Pfam PF01585 1.8E-14 929 970 IPR000467 G-patch domain