Leaf Senescence DataBase

Basic information

Locus name

AT5G18900

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Redox regulation

Effect for Senescence

unclear

Gene Description

oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity;

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

biological process	oxidation-reduction process
molecular function	iron ion binding oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors oxidoreductase activity

Pathway

KEGG

Sequence

AT5G18900.1 | Genomic | mRNA | CDS | Protein

Ortholog Group

Ortholog Groups: OG5_137291

Accession	Taxon
NP_197391 ( AT5G18900 )	Arabidopsis thaliana
NP_566279	Arabidopsis thaliana
ACO66286	Micromonas sp. RCC299
NP_001055890	Oryza sativa Japonica Group
e_gw1.01.00.442.1	Ostreococcus tauri
29726.m003953	Ricinus communis
32128.m000014	Ricinus communis
XP_002948787	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR10869	1.5E-131	26	280	No hit	NA
SMART	SM00702	4.9E-61	44	244	IPR006620	Prolyl 4-hydroxylase, alpha subunit
ProSiteProfiles	PS51471	12.5	120	245	IPR005123	Oxoglutarate/iron-dependent dioxygenase
Pfam	PF03171	8.3E-12	121	244	IPR005123	Oxoglutarate/iron-dependent dioxygenase
Pfam	PF01549	2.9E-4	257	298	IPR003582	Metridin-like ShK toxin

Subcellular Localization

Localization 1
	Localization	nucleus
	Evidence	Localization with GFP-fusion protein (GFP:cDNA)
	Pubmed ID	10737809

Localization 2
	Localization	cytoplasm and nucleus
	Evidence	Localization with GFP-ORF fusion protein (GFP:cDNA)
	Pubmed ID	15610358