Basic information
Locus name	AT5G63180
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	pectinesterase family protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Sequence	AT5G63180.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT5G63180.1  miRNA: ath-miR416 miRNA: ath-miR416 mfe: -31.5 kcal/mol  p-value: 0.000178  position: 847  target 5' G  C      A           A  3'             GA ACAGUG UACGUACGAAC                 CU UGUCAC AUGCAUGCUUG      miRNA  3' A                     G  5'
Ortholog Group
Ortholog Groups: OG5_136647	Accession Taxon NP_187357 Arabidopsis thaliana NP_189065 Arabidopsis thaliana NP_189110 Arabidopsis thaliana NP_189376 Arabidopsis thaliana NP_193057 Arabidopsis thaliana NP_563715 Arabidopsis thaliana NP_564906 Arabidopsis thaliana NP_567409 Arabidopsis thaliana NP_567707 Arabidopsis thaliana NP_568705 Arabidopsis thaliana NP_568967 ( AT5G63180 ) Arabidopsis thaliana NP_001052103 Oryza sativa Japonica Group e_gw1.112.35.1 Physcomitrella patens subsp. patens e_gw1.173.30.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_840049 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_670081 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_355000008 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_563000001 Physcomitrella patens subsp. patens 29633.m000913 Ricinus communis 29929.m004773 Ricinus communis 30204.m001796 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31683 1.1E-224 49 432 No hit NA SUPERFAMILY SSF51126 1.4E-103 58 399 IPR011050 Pectin lyase fold/virulence factor PRINTS PR00807 2.8E-83 104 121 IPR018082 AmbAllergen PRINTS PR00807 2.8E-83 128 153 IPR018082 AmbAllergen Pfam PF00544 3.0E-64 152 347 IPR002022 Pectate lyase/Amb allergen SMART SM00656 1.3E-102 156 353 IPR002022 Pectate lyase/Amb allergen PRINTS PR00807 2.8E-83 164 180 IPR018082 AmbAllergen PRINTS PR00807 2.8E-83 228 249 IPR018082 AmbAllergen PRINTS PR00807 2.8E-83 308 327 IPR018082 AmbAllergen PRINTS PR00807 2.8E-83 330 349 IPR018082 AmbAllergen PRINTS PR00807 2.8E-83 372 396 IPR018082 AmbAllergen PRINTS PR00807 2.8E-83 403 426 IPR018082 AmbAllergen