Basic information
Locus name	AT3G46610
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	pentatricopeptide (PPR) repeat-containing protein;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Sequence	AT3G46610.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT3G46610.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -29.7 kcal/mol  p-value: 0.002286  position: 1202  target 5' A        U     A       U  3'             GGCGGUGG UGGUG AAGAUGA                 CUGCUACU ACUAC UUCUACU      miRNA  3' A                         5'
Ortholog Group
Ortholog Groups: OG5_170553	Accession Taxon NP_190245 ( AT3G46610 ) Arabidopsis thaliana NP_001066581 Oryza sativa Japonica Group fgenesh1_pg.scaffold_6000066 Physcomitrella patens subsp. patens 29633.m000909 Ricinus communis fgenesh1_pg.C_chr_10000208 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24015 2.7E-84 30 640 No hit NA ProSiteProfiles PS51375 6.8 145 179 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 5.3 181 217 IPR002885 Pentatricopeptide repeat Pfam PF13041 3.1E-10 217 260 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 10.6 218 252 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 8.9E-6 220 253 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 6.4 253 283 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 6.6 309 344 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 8.3 380 414 IPR002885 Pentatricopeptide repeat Pfam PF01535 0.6 383 411 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 9.2 422 456 IPR002885 Pentatricopeptide repeat Pfam PF13812 0.1 424 456 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 0.0 426 456 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 9.1 457 491 IPR002885 Pentatricopeptide repeat Pfam PF01535 0.0 460 488 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 8.9E-5 461 492 IPR002885 Pentatricopeptide repeat Pfam PF13041 4.6E-10 491 536 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 10.8 492 526 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 3.8E-6 494 527 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 8.5 527 561 IPR002885 Pentatricopeptide repeat Pfam PF13041 3.0E-14 561 609 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 11.6 562 596 IPR002885 Pentatricopeptide repeat TIGRFAM TIGR00756 3.3E-8 564 598 IPR002885 Pentatricopeptide repeat ProSiteProfiles PS51375 8.3 597 631 IPR002885 Pentatricopeptide repeat