Basic information
Locus name	AT5G11920
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Protein degradation/modification:hydrolase
Effect for Senescence	Unclear
Gene Description	Glycosyl hydrolase family 32 protein
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process carbohydrate metabolic process molecular function hydrolase activity, hydrolyzing O-glycosyl compounds
Pathway	KEGG map00052 (EC 3.2.1.26) map00500 (EC 3.2.1.26) MetaCyc PWY-621
Sequence	AT5G11920.1 | Genomic | mRNA | CDS | Protein AT5G11920.2 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT5G11920.1  miRNA: ath-miR780 miRNA: ath-miR780 mfe: -30.5 kcal/mol  p-value: 0.007203  position:  354  target 5' C    A A              U 3'             UUUG C UCAACAGCUGCUGG              GGAC G AGUUGUCGACGAUC   miRNA  3' U                     U 5'  target: AT5G11920.1  miRNA: ath-miR826 miRNA: ath-miR826 mfe: -24.7 kcal/mol  p-value: 0.064304  position:  1173  target 5' C    A               C 3'             UAUG AUUCAAAACCGG CU              GUGC UAGGUUUUGGCC GA   miRNA  3'      A            U  U 5'  target: AT5G11920.2  miRNA: ath-miR780 miRNA: ath-miR780 mfe: -30.5 kcal/mol  p-value: 0.006087  position:  354  target 5' C    A A              U 3'             UUUG C UCAACAGCUGCUGG              GGAC G AGUUGUCGACGAUC   miRNA  3' U                     U 5'  target: AT5G11920.2  miRNA: ath-miR826 miRNA: ath-miR826 mfe: -24.7 kcal/mol  p-value: 0.054522  position:  1173  target 5' C    A               C 3'             UAUG AUUCAAAACCGG CU              GUGC UAGGUUUUGGCC GA   miRNA  3'      A            U  U 5'
Ortholog Group
Ortholog Groups: OG5_211678	Accession Taxon NP_001078574 Arabidopsis thaliana NP_568254 ( AT5G11920 ) Arabidopsis thaliana
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31953 4.1E-203 15 414 No hit NA SUPERFAMILY SSF75005 1.1E-94 16 342 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain Pfam PF00251 3.9E-104 21 341 IPR013148 Glycosyl hydrolase family 32, N-terminal ProSitePatterns PS00609 NA 21 34 IPR018053 Glycoside hydrolase, family 32, active site SMART SM00640 1.9E-159 21 426 IPR001362 Glycoside hydrolase, family 32
Subcellular Localization
Localization 1 Localization vacuole Evidence SUBAcon Pubmed ID 23180787
Localization 2 Localization vacuole,plasma membrane Evidence SUBAcon Pubmed ID 23180787