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| Locus name | AT5G24550 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Protein degradation/modification:hydrolase |
| Effect for Senescence | Unclear |
| Gene Description | Glycosyl hydrolase family 1 protein. Developmental senescence-enhanced genes dependent on SA pathway. |
| Evidence | Genomic evidence:microarray data [Ref 1] |
| References | 1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJComparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.Plant J. 2005 May;42(4):567-85 |
| Gene Ontology | |
| Sequence | AT5G24550.1 | Genomic | mRNA | CDS | Protein
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| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT5G24550.1
miRNA: ath-miR773
miRNA: ath-miR773
mfe: -26.5 kcal/mol
p-value: 0.014744
position: 940
target 5' A C A U 3'
AGACAA AGCUGGAA UAGA
UCUGUU UCGACCUU GUUU
miRNA 3' C U C 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_144835 | |
| Cross Link | |
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| Database | Entry ID | E-value | Start | End | InterPro ID | Description | | PANTHER | PTHR10353 | 3.0E-289 | 1 | 520 | IPR001360 | Glycoside hydrolase, family 1 | | SUPERFAMILY | SSF51445 | 7.1E-179 | 27 | 510 | IPR017853 | Glycoside hydrolase, superfamily | | Pfam | PF00232 | 4.1E-158 | 35 | 513 | IPR001360 | Glycoside hydrolase, family 1 | | ProSitePatterns | PS00653 | NA | 41 | 55 | IPR018120 | Glycoside hydrolase, family 1, active site | | PRINTS | PR00131 | 4.8E-25 | 335 | 349 | IPR001360 | Glycoside hydrolase, family 1 | | PRINTS | PR00131 | 4.8E-25 | 413 | 421 | IPR001360 | Glycoside hydrolase, family 1 | | PRINTS | PR00131 | 4.8E-25 | 436 | 447 | IPR001360 | Glycoside hydrolase, family 1 | | PRINTS | PR00131 | 4.8E-25 | 458 | 475 | IPR001360 | Glycoside hydrolase, family 1 | | PRINTS | PR00131 | 4.8E-25 | 482 | 494 | IPR001360 | Glycoside hydrolase, family 1 |
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