Basic information
Locus name	AT3G54850
Alias	PUB14
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	PUB14; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex;
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process protein ubiquitination cellular component ubiquitin ligase complex molecular function protein binding ubiquitin-protein ligase activity
Sequence	AT3G54850.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_177896	Accession Taxon NP_191045 ( AT3G54850 ) Arabidopsis thaliana NP_001056535 Oryza sativa Japonica Group 29745.m000375 Ricinus communis XP_002946872 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23315 1.4E-193 11 624 No hit NA SUPERFAMILY SSF57850 2.6E-28 247 323 No hit NA Pfam PF04564 2.4E-21 248 318 IPR003613 U box domain SMART SM00504 1.5E-32 251 314 IPR003613 U box domain SUPERFAMILY SSF48371 10.0E-48 345 620 IPR016024 Armadillo-type fold Pfam PF00514 2.2E-10 376 415 IPR000225 Armadillo SMART SM00185 1.9E-5 376 416 IPR000225 Armadillo ProSiteProfiles PS50176 13.6 387 429 IPR000225 Armadillo SMART SM00185 0.4 417 457 IPR000225 Armadillo Pfam PF05804 7.9E-7 452 564 No hit NA SMART SM00185 6.3 458 498 IPR000225 Armadillo SMART SM00185 270.0 499 539 IPR000225 Armadillo ProSiteProfiles PS50176 8.8 510 552 IPR000225 Armadillo SMART SM00185 4.2 540 580 IPR000225 Armadillo