Basic information
Locus name	AT4G28490
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction:PPI
Effect for Senescence	Unclear
Gene Description	Leucine-rich repeat family protein.Developmental senescence-enhanced genes dependent on SA pathway.
Evidence	Molecular evidence: microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process protein phosphorylation molecular function ATP binding protein binding protein kinase activity
Sequence	AT4G28490.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT4G28490.1  miRNA: ath-miR1888 miRNA: ath-miR1888 mfe: -20.5 kcal/mol  p-value: 0.110818  position:  381  target 5' A       C            U 3'             UC UCAU AGUCUUGAUUUA              AG AGUG UUAGAAUUGAAU   miRNA  3' A  A    U              5'  target: AT4G28490.1  miRNA: ath-miR413 miRNA: ath-miR413 mfe: -23.5 kcal/mol  p-value: 0.150848  position:  1162  target 5' C     U             G 3'             UGCGG G AAGGGAAGCUA              ACGUC U UUCUCUUUGAU   miRNA  3' C     U G           A 5'
Ortholog Group
Ortholog Groups: OG5_127136	Accession Taxon NP_001032080 Arabidopsis thaliana NP_001117501 Arabidopsis thaliana NP_001117591 Arabidopsis thaliana NP_172335 Arabidopsis thaliana NP_172468 Arabidopsis thaliana NP_173166 Arabidopsis thaliana NP_173217 Arabidopsis thaliana NP_174166 Arabidopsis thaliana NP_174673 Arabidopsis thaliana NP_174809 Arabidopsis thaliana NP_175957 Arabidopsis thaliana NP_177363 Arabidopsis thaliana NP_177451 Arabidopsis thaliana NP_177710 Arabidopsis thaliana NP_178304 Arabidopsis thaliana NP_180875 Arabidopsis thaliana NP_187946 Arabidopsis thaliana NP_188604 Arabidopsis thaliana NP_189066 Arabidopsis thaliana NP_190536 Arabidopsis thaliana NP_192625 Arabidopsis thaliana NP_193747 Arabidopsis thaliana NP_193760 Arabidopsis thaliana NP_194578 ( AT4G28490 ) Arabidopsis thaliana NP_194594 Arabidopsis thaliana NP_195650 Arabidopsis thaliana NP_196345 Arabidopsis thaliana NP_197965 Arabidopsis thaliana NP_199283 Arabidopsis thaliana NP_199705 Arabidopsis thaliana NP_199777 Arabidopsis thaliana NP_199948 Arabidopsis thaliana NP_200415 Arabidopsis thaliana NP_200956 Arabidopsis thaliana NP_201198 Arabidopsis thaliana NP_201371 Arabidopsis thaliana NP_201372 Arabidopsis thaliana NP_567748 Arabidopsis thaliana NP_849538 Arabidopsis thaliana NP_850942 Arabidopsis thaliana 120925 Chlamydomonas reinhardtii ACO66850 Micromonas sp. RCC299 NP_001042139 Oryza sativa Japonica Group NP_001042546 Oryza sativa Japonica Group NP_001044077 Oryza sativa Japonica Group NP_001044213 Oryza sativa Japonica Group NP_001044979 Oryza sativa Japonica Group NP_001045202 Oryza sativa Japonica Group NP_001045656 Oryza sativa Japonica Group NP_001046354 Oryza sativa Japonica Group NP_001046355 Oryza sativa Japonica Group NP_001047110 Oryza sativa Japonica Group NP_001048946 Oryza sativa Japonica Group NP_001049453 Oryza sativa Japonica Group NP_001051418 Oryza sativa Japonica Group NP_001052097 Oryza sativa Japonica Group NP_001054764 Oryza sativa Japonica Group NP_001054768 Oryza sativa Japonica Group NP_001056517 Oryza sativa Japonica Group NP_001057858 Oryza sativa Japonica Group NP_001057860 Oryza sativa Japonica Group NP_001057964 Oryza sativa Japonica Group NP_001058593 Oryza sativa Japonica Group NP_001058840 Oryza sativa Japonica Group NP_001058906 Oryza sativa Japonica Group NP_001059710 Oryza sativa Japonica Group NP_001061677 Oryza sativa Japonica Group NP_001061926 Oryza sativa Japonica Group NP_001062124 Oryza sativa Japonica Group NP_001062792 Oryza sativa Japonica Group NP_001062883 Oryza sativa Japonica Group NP_001064047 Oryza sativa Japonica Group NP_001064062 Oryza sativa Japonica Group NP_001064813 Oryza sativa Japonica Group NP_001064816 Oryza sativa Japonica Group NP_001064819 Oryza sativa Japonica Group NP_001065120 Oryza sativa Japonica Group NP_001067347 Oryza sativa Japonica Group NP_001067348 Oryza sativa Japonica Group NP_001067561 Oryza sativa Japonica Group NP_001067562 Oryza sativa Japonica Group e_gw1.11.00.101.1 Ostreococcus tauri e_gw1.14.30.1 Physcomitrella patens subsp. patens e_gw1.14.67.1 Physcomitrella patens subsp. patens e_gw1.161.14.1 Physcomitrella patens subsp. patens e_gw1.172.6.1 Physcomitrella patens subsp. patens e_gw1.182.5.1 Physcomitrella patens subsp. patens e_gw1.244.2.1 Physcomitrella patens subsp. patens e_gw1.281.94.1 Physcomitrella patens subsp. patens e_gw1.5.384.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_1110048 Physcomitrella patens subsp. patens estExt_Genewise1.C_680049 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1780069 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2120003 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_480110 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_247000007 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_63000078 Physcomitrella patens subsp. patens gw1.102.8.1 Physcomitrella patens subsp. patens 27837.m000161 Ricinus communis 27893.m000225 Ricinus communis 27956.m000355 Ricinus communis 27985.m000860 Ricinus communis 28644.m000896 Ricinus communis 28830.m000232 Ricinus communis 28830.m000234 Ricinus communis 28966.m000525 Ricinus communis 29592.m000104 Ricinus communis 29637.m000755 Ricinus communis 29666.m001469 Ricinus communis 29680.m001721 Ricinus communis 29680.m001748 Ricinus communis 29737.m001253 Ricinus communis 29765.m000745 Ricinus communis 29780.m001387 Ricinus communis 29794.m003413 Ricinus communis 29904.m002997 Ricinus communis 29904.m003011 Ricinus communis 29908.m006021 Ricinus communis 29912.m005436 Ricinus communis 29983.m003126 Ricinus communis 30074.m001369 Ricinus communis 30099.m001625 Ricinus communis 30147.m013904 Ricinus communis 30147.m013919 Ricinus communis 30147.m014235 Ricinus communis 30147.m014245 Ricinus communis 30147.m014283 Ricinus communis 30158.m000501 Ricinus communis 30170.m013627 Ricinus communis 30170.m013628 Ricinus communis 30170.m013629 Ricinus communis 30170.m014376 Ricinus communis 30190.m011299 Ricinus communis 30204.m001801 Ricinus communis 51128.m000015 Ricinus communis estExt_thaps1_ua_kg.C_chr_40298 Thalassiosira pseudonana CCMP1335 XP_002948176 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description Pfam PF08263 9.3E-10 21 62 IPR013210 Leucine-rich repeat-containing N-terminal, type 2 SUPERFAMILY SSF52058 3.4E-52 47 304 No hit NA SMART SM00369 52.0 88 112 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 5.4 90 112 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 5.9 115 137 IPR001611 Leucine-rich repeat SMART SM00369 53.0 138 162 IPR003591 Leucine-rich repeat, typical subtype Pfam PF12799 5.4E-8 139 176 IPR025875 Leucine rich repeat 4 ProSiteProfiles PS51450 6.0 140 161 IPR001611 Leucine-rich repeat PANTHER PTHR24420 0.0 145 999 No hit NA ProSiteProfiles PS51450 5.5 164 186 IPR001611 Leucine-rich repeat SMART SM00369 230.0 186 211 IPR003591 Leucine-rich repeat, typical subtype Pfam PF12799 7.7E-8 212 252 IPR025875 Leucine rich repeat 4 ProSiteProfiles PS51450 4.6 213 236 IPR001611 Leucine-rich repeat SUPERFAMILY SSF52047 3.3E-62 228 580 No hit NA SMART SM00369 36.0 235 259 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 6.2 237 259 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 5.3 285 307 IPR001611 Leucine-rich repeat SMART SM00369 310.0 306 330 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 5.2 308 330 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 4.7 332 353 IPR001611 Leucine-rich repeat Pfam PF00560 0.4 357 376 IPR001611 Leucine-rich repeat Pfam PF13855 3.2E-7 380 438 No hit NA ProSiteProfiles PS51450 4.6 380 402 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 4.6 404 427 IPR001611 Leucine-rich repeat SMART SM00369 190.0 426 450 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 5.4 452 474 IPR001611 Leucine-rich repeat Pfam PF13516 0.3 498 519 No hit NA SMART SM00369 39.0 498 521 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 5.6 500 523 IPR001611 Leucine-rich repeat Pfam PF00560 0.7 524 542 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 6.5 524 546 IPR001611 Leucine-rich repeat SMART SM00369 220.0 546 569 IPR003591 Leucine-rich repeat, typical subtype ProSiteProfiles PS51450 5.8 548 569 IPR001611 Leucine-rich repeat Pfam PF00560 0.1 549 570 IPR001611 Leucine-rich repeat Pfam PF00560 0.4 571 588 IPR001611 Leucine-rich repeat ProSiteProfiles PS51450 7.4 571 593 IPR001611 Leucine-rich repeat SUPERFAMILY SSF56112 1.8E-73 675 964 IPR011009 Protein kinase-like domain ProSiteProfiles PS50011 36.5 683 968 IPR000719 Protein kinase, catalytic domain SMART SM00220 4.5E-32 683 968 IPR002290 Serine/threonine- / dual specificity protein kinase, catalytic domain Pfam PF00069 1.6E-44 686 916 IPR000719 Protein kinase, catalytic domain ProSitePatterns PS00107 NA 689 712 IPR017441 Protein kinase, ATP binding site ProSitePatterns PS00108 NA 815 827 IPR008271 Serine/threonine-protein kinase, active site
Subcellular Localization
Localization	plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787