Basic information
Locus name	AT3G24900
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction:PPI
Effect for Senescence	Unclear
Gene Description	Leucine-rich repeat family protein. Developmental senescence-enhanced genes dependent on SA pathway.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	molecular function protein binding
Sequence	AT3G24900.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group
Ortholog Groups: OG5_130149	Accession Taxon NP_001154519 Arabidopsis thaliana NP_001154652 Arabidopsis thaliana NP_175139 Arabidopsis thaliana NP_175225 Arabidopsis thaliana NP_177295 Arabidopsis thaliana NP_177296 Arabidopsis thaliana NP_179112 Arabidopsis thaliana NP_180114 Arabidopsis thaliana NP_180825 Arabidopsis thaliana NP_180827 Arabidopsis thaliana NP_180861 Arabidopsis thaliana NP_180864 Arabidopsis thaliana NP_180865 Arabidopsis thaliana NP_180867 Arabidopsis thaliana NP_187187 Arabidopsis thaliana NP_187188 Arabidopsis thaliana NP_187216 Arabidopsis thaliana NP_187217 Arabidopsis thaliana NP_187712 Arabidopsis thaliana NP_187719 Arabidopsis thaliana NP_188941 Arabidopsis thaliana NP_188952 Arabidopsis thaliana NP_188953 Arabidopsis thaliana NP_189134 ( AT3G24900 ) Arabidopsis thaliana NP_189137 Arabidopsis thaliana NP_189138 Arabidopsis thaliana NP_189531 Arabidopsis thaliana NP_193117 Arabidopsis thaliana NP_193118 Arabidopsis thaliana NP_193124 Arabidopsis thaliana NP_197963 Arabidopsis thaliana NP_198058 Arabidopsis thaliana NP_198833 Arabidopsis thaliana NP_566757 Arabidopsis thaliana NP_567412 Arabidopsis thaliana NP_849957 Arabidopsis thaliana 142748 Chlamydomonas reinhardtii NP_001041930 Oryza sativa Japonica Group NP_001042079 Oryza sativa Japonica Group NP_001042089 Oryza sativa Japonica Group NP_001042091 Oryza sativa Japonica Group NP_001042092 Oryza sativa Japonica Group NP_001042093 Oryza sativa Japonica Group NP_001042098 Oryza sativa Japonica Group NP_001042100 Oryza sativa Japonica Group NP_001052528 Oryza sativa Japonica Group NP_001053102 Oryza sativa Japonica Group NP_001066404 Oryza sativa Japonica Group NP_001066407 Oryza sativa Japonica Group NP_001066419 Oryza sativa Japonica Group 29601.m000437 Ricinus communis 29601.m000438 Ricinus communis 29836.m000564 Ricinus communis 29848.m004515 Ricinus communis 29848.m004518 Ricinus communis thaps1_ua_kg.chr_4000259 Thalassiosira pseudonana CCMP1335 XP_002954213 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description ProSiteProfiles PS51257 5.0 1 18 No hit NA PANTHER PTHR24420 4.8E-170 82 883 No hit NA SUPERFAMILY SSF52058 6.1E-48 89 365 No hit NA SMART SM00369 32.0 98 122 IPR003591 Leucine-rich repeat, typical subtype Pfam PF00560 0.0 100 121 IPR001611 Leucine-rich repeat SMART SM00369 240.0 170 194 IPR003591 Leucine-rich repeat, typical subtype SMART SM00369 46.0 196 220 IPR003591 Leucine-rich repeat, typical subtype Pfam PF00560 0.3 198 221 IPR001611 Leucine-rich repeat SMART SM00369 190.0 221 245 IPR003591 Leucine-rich repeat, typical subtype SMART SM00369 8.0 268 292 IPR003591 Leucine-rich repeat, typical subtype Pfam PF00560 0.7 270 290 IPR001611 Leucine-rich repeat SUPERFAMILY SSF52058 1.2E-10 392 481 No hit NA Pfam PF13855 1.7E-6 393 449 No hit NA SMART SM00369 100.0 414 438 IPR003591 Leucine-rich repeat, typical subtype SUPERFAMILY SSF52058 6.1E-48 414 443 No hit NA SUPERFAMILY SSF52058 1.3E-44 484 660 No hit NA Pfam PF00560 0.2 510 528 IPR001611 Leucine-rich repeat Pfam PF13855 3.5E-8 556 614 No hit NA SUPERFAMILY SSF52058 6.1E-48 559 651 No hit NA SMART SM00369 320.0 601 626 IPR003591 Leucine-rich repeat, typical subtype SMART SM00369 77.0 628 652 IPR003591 Leucine-rich repeat, typical subtype Pfam PF00560 0.7 631 652 IPR001611 Leucine-rich repeat SUPERFAMILY SSF52058 1.3E-44 707 799 No hit NA Pfam PF00560 0.6 728 749 IPR001611 Leucine-rich repeat SMART SM00369 14.0 749 773 IPR003591 Leucine-rich repeat, typical subtype Pfam PF00560 0.1 751 772 IPR001611 Leucine-rich repeat