Leaf Senescence DataBase

Basic information

Locus name

AT5G58640

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

redox regulation

Effect for Senescence

unclear

Gene Description

selenoprotein-related; FUNCTIONS IN: selenium binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SelT/selW/selH selenoprotein (InterPro:IPR011893);

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

biological process	cell redox homeostasis
molecular function	selenium binding

Sequence

Ortholog Group

Ortholog Groups: OG5_130181

Accession	Taxon
NP_001032096	Arabidopsis thaliana
NP_190314	Arabidopsis thaliana
NP_200672 ( AT5G58640 )	Arabidopsis thaliana
206081	Chlamydomonas reinhardtii
ACO66803	Micromonas sp. RCC299
NP_001055791	Oryza sativa Japonica Group
fgenesh1_pg.C_Chr_03.0001000358	Ostreococcus tauri
28176.m000272	Ricinus communis
estExt_fgenesh1_pg.C_chr_20720	Thalassiosira pseudonana CCMP1335
XP_002945666	Volvox carteri f. nagariensis

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR13544	4.3E-83	1	228	IPR019389	Selenoprotein T
SUPERFAMILY	SSF52833	5.8E-18	74	113	IPR012336	Thioredoxin-like fold
Pfam	PF10262	4.2E-17	75	215	IPR011893	Selenoprotein, Rdx type
TIGRFAM	TIGR02174	1.0E-24	76	214	IPR011893	Selenoprotein, Rdx type
SUPERFAMILY	SSF52833	5.8E-18	181	217	IPR012336	Thioredoxin-like fold

Subcellular Localization

Localization 1
	Localization	endoplasmic reticulum
	Evidence	SUBAcon
	Pubmed ID	23180787

Localization 2
	Localization	plasma membrane
	Evidence	SUBAcon
	Pubmed ID	23180787