Basic information
Locus name	AT3G13100
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Nutrient recycling:ABC transporter
Effect for Senescence	Unclear
Gene Description	ABC transporter
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process transmembrane transport transport cellular component integral to membrane molecular function ATP binding ATPase activity, coupled to transmembrane movement of substances ATPase activity
Sequence	AT3G13100.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT3G13100.1  miRNA: ath-miR396a miRNA: ath-miR396a mfe: -25.1 kcal/mol  p-value: 0.072792  position:  1111  target 5' A    G               U 3'             GGUU C AGAAAGCUG GGA              UCAA G UCUUUCGAC CCU   miRNA  3' G      U         A   U 5'  target: AT3G13100.1  miRNA: ath-miR396b miRNA: ath-miR396b mfe: -25.0 kcal/mol  p-value: 0.069998  position:  1110  target 5' C     G               U 3'             AGGUU C AGAAAGCUG GGA              UUCAA G UCUUUCGAC CCU   miRNA  3'         U         A   U 5'  target: AT3G13100.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -23.8 kcal/mol  p-value: 0.045911  position:  665  target 5' A  C   A          U  U 3'             GG CGA GAUGAUGAGG UG              CU GCU CUACUACUUC AC   miRNA  3' A      A          U  U 5'
Ortholog Group
Ortholog Groups: OG5_126561	Accession Taxon NP_001031116 Arabidopsis thaliana NP_171908 Arabidopsis thaliana NP_174329 Arabidopsis thaliana NP_174330 Arabidopsis thaliana NP_174331 Arabidopsis thaliana NP_178811 Arabidopsis thaliana NP_181013 Arabidopsis thaliana NP_182301 Arabidopsis thaliana NP_187915 Arabidopsis thaliana NP_187916 Arabidopsis thaliana NP_187917 ( AT3G13100 ) Arabidopsis thaliana NP_188762 Arabidopsis thaliana NP_191473 Arabidopsis thaliana NP_191575 Arabidopsis thaliana NP_191656 Arabidopsis thaliana NP_191829 Arabidopsis thaliana NP_850575 Arabidopsis thaliana NP_974299 Arabidopsis thaliana NP_974300 Arabidopsis thaliana CMN251C Cyanidioschyzon merolae strain 10D 134058 Chlamydomonas reinhardtii 143900 Chlamydomonas reinhardtii 190380 Chlamydomonas reinhardtii 54676 Chlamydomonas reinhardtii ACO60871 Micromonas sp. RCC299 ACO69477 Micromonas sp. RCC299 NP_001042159 Oryza sativa Japonica Group NP_001043000 Oryza sativa Japonica Group NP_001046583 Oryza sativa Japonica Group NP_001046585 Oryza sativa Japonica Group NP_001048934 Oryza sativa Japonica Group NP_001052251 Oryza sativa Japonica Group NP_001052252 Oryza sativa Japonica Group NP_001053695 Oryza sativa Japonica Group NP_001053696 Oryza sativa Japonica Group NP_001053904 Oryza sativa Japonica Group NP_001054864 Oryza sativa Japonica Group NP_001056870 Oryza sativa Japonica Group NP_001056996 Oryza sativa Japonica Group NP_001065790 Oryza sativa Japonica Group NP_001067031 Oryza sativa Japonica Group e_gw1.03.00.16.1 Ostreococcus tauri e_gw1.07.00.6.1 Ostreococcus tauri e_gw1.121.4.1 Physcomitrella patens subsp. patens e_gw1.136.12.1 Physcomitrella patens subsp. patens e_gw1.21.192.1 Physcomitrella patens subsp. patens e_gw1.227.2.1 Physcomitrella patens subsp. patens e_gw1.402.38.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_1220086 Physcomitrella patens subsp. patens estExt_Genewise1.C_2230056 Physcomitrella patens subsp. patens estExt_Genewise1.C_2930039 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_1420018 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_1050058 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2240079 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_3520041 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_518000010 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_540000001 Physcomitrella patens subsp. patens 28694.m000689 Ricinus communis 29337.m000213 Ricinus communis 29337.m000214 Ricinus communis 29337.m000216 Ricinus communis 29637.m000727 Ricinus communis 29929.m004739 Ricinus communis 29932.m000603 Ricinus communis 29932.m000604 Ricinus communis 29983.m003220 Ricinus communis 29986.m001594 Ricinus communis 30131.m006854 Ricinus communis 30169.m006551 Ricinus communis 30869.m000035 Ricinus communis e_gw1.23.1.1 Thalassiosira pseudonana CCMP1335 e_gw1.4.10.1 Thalassiosira pseudonana CCMP1335 estExt_gwp_gw1.C_chr_40418 Thalassiosira pseudonana CCMP1335 estExt_gwp_gw1.C_chr_70405 Thalassiosira pseudonana CCMP1335 fgenesh1_pg.C_bd_13x1000026 Thalassiosira pseudonana CCMP1335 gw1.13.6.1 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_23000014 Thalassiosira pseudonana CCMP1335 XP_002946948 Volvox carteri f. nagariensis XP_002950646 Volvox carteri f. nagariensis XP_002951320 Volvox carteri f. nagariensis XP_002952511 Volvox carteri f. nagariensis XP_002957801 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR24223 0.0 76 1484 No hit NA SUPERFAMILY SSF90123 7.3E-27 298 602 IPR011527 ABC transporter, transmembrane domain, type 1 Pfam PF00664 2.4E-18 310 577 IPR001140 ABC transporter, transmembrane domain ProSiteProfiles PS50929 25.8 310 590 IPR017940 ABC transporter, integral membrane type 1 SUPERFAMILY SSF52540 9.4E-57 620 846 IPR027417 P-loop containing nucleoside triphosphate hydrolase ProSiteProfiles PS50893 22.2 624 847 IPR003439 ABC transporter-like SMART SM00382 1.1E-12 651 824 IPR003593 AAA+ ATPase domain Pfam PF00005 4.2E-15 666 776 IPR003439 ABC transporter-like ProSitePatterns PS00211 NA 749 763 IPR017871 ABC transporter, conserved site SUPERFAMILY SSF90123 1.2E-54 922 1222 IPR011527 ABC transporter, transmembrane domain, type 1 ProSiteProfiles PS50929 39.3 924 1204 IPR017940 ABC transporter, integral membrane type 1 Pfam PF00664 6.8E-27 925 1190 IPR001140 ABC transporter, transmembrane domain SUPERFAMILY SSF52540 2.4E-65 1233 1467 IPR027417 P-loop containing nucleoside triphosphate hydrolase ProSiteProfiles PS50893 17.7 1241 1475 IPR003439 ABC transporter-like SMART SM00382 2.1E-13 1267 1452 IPR003593 AAA+ ATPase domain Pfam PF00005 1.0E-20 1282 1406 IPR003439 ABC transporter-like
Subcellular Localization
Localization	plasma membrane
Evidence	SUBAcon
Pubmed ID	23180787