Basic information   
Locus name AT1G02790
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryLipid/Carbohydrate metabolism:Exopolygalacturonase
Effect for SenescenceUnclear
Gene DescriptionExopolygalacturonase (PGA3).Upregulated in senescent leaves.
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4):567-85

Gene Ontology
biological process
molecular function
SequenceAT1G02790.1 | Genomic | mRNA | CDS | Protein
Microarray   
Sampling Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4)
Comparation Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
Ortholog Group      
Ortholog Groups: OG5_210862
AccessionTaxon
NP_171778 ( AT1G02790 ) Arabidopsis thaliana
29726.m004090Ricinus communis
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PANTHERPTHR313751.6E-1721422No hitNA
ProSiteProfilesPS512575.0129No hitNA
SUPERFAMILYSSF511262.4E-10348420IPR011050Pectin lyase fold/virulence factor
PfamPF002953.7E-9579388IPR000743Glycoside hydrolase, family 28
SMARTSM00710710.0200226IPR006626Parallel beta-helix repeat
SMARTSM00710590.0227248IPR006626Parallel beta-helix repeat
SMARTSM007101,400.0250270IPR006626Parallel beta-helix repeat
ProSitePatternsPS00502NA257270IPR000743Glycoside hydrolase, family 28
SMARTSM0071065.0280301IPR006626Parallel beta-helix repeat
SMARTSM007108,500.0310331IPR006626Parallel beta-helix repeat
Subcellular Localization   
Localizationextracellular
EvidenceSUBAcon
Pubmed ID23180787