Basic information
Locus name	AT5G13930
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Redox regulation:flavonoid biosynthesis
Effect for Senescence	Unclear
Gene Description	Chalcone synthase
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process biosynthetic process molecular function transferase activity, transferring acyl groups other than amino-acyl groups transferase activity, transferring acyl groups
Pathway	KEGG map00941 (EC 2.3.1.74) MetaCyc PWY-5135
Sequence	AT5G13930.1 | Genomic | mRNA | CDS | Protein
Microarray
Sampling	Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4)
Comparation	Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. Genes showing at least 3 fold (ratio) up regulation during leaf senescence.
miRNA Interaction
Details	target: AT5G13930.1  miRNA: ath-miR156h miRNA: ath-miR156h mfe: -25.1 kcal/mol  p-value: 0.006423  position:  1423  target 5' U  A           G    U 3'             GU CUCUCUUUUUU UGUC              CA GAGAGAAAGAA ACAG   miRNA  3'    C           G    U 5'  target: AT5G13930.1  miRNA: ath-miR396a miRNA: ath-miR396a mfe: -25.7 kcal/mol  p-value: 0.011813  position:  115  target 5' A  C            A    C 3'             GG UC AGAGAGCUG UGGA              UC AG UCUUUCGAC ACCU   miRNA  3' G  A  U              U 5'  target: AT5G13930.1  miRNA: ath-miR396b miRNA: ath-miR396b mfe: -25.6 kcal/mol  p-value: 0.013931  position:  114  target 5' C   C            A    C 3'             AGG UC AGAGAGCUG UGGA              UUC AG UCUUUCGAC ACCU   miRNA  3'     A  U              U 5'
Ortholog Group
Ortholog Groups: OG5_131780	Accession Taxon NP_191915 Arabidopsis thaliana NP_196897 ( AT5G13930 ) Arabidopsis thaliana 167834 Chlamydomonas reinhardtii NP_001059187 Oryza sativa Japonica Group NP_001068009 Oryza sativa Japonica Group e_gw1.1.371.1 Physcomitrella patens subsp. patens e_gw1.292.29.1 Physcomitrella patens subsp. patens e_gw1.303.67.1 Physcomitrella patens subsp. patens e_gw1.303.70.1 Physcomitrella patens subsp. patens e_gw1.365.20.1 Physcomitrella patens subsp. patens e_gw1.39.179.1 Physcomitrella patens subsp. patens e_gw1.463.9.1 Physcomitrella patens subsp. patens e_gw1.61.117.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_220002 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_4250003 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_5000002 Physcomitrella patens subsp. patens fgenesh1_kg.scaffold_228000002 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_20000158 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_365000013 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_38000003 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_426000030 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_463000007 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_463000010 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_25000034 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_34000025 Physcomitrella patens subsp. patens 29648.m001959 Ricinus communis 29904.m002980 Ricinus communis 30131.m006959 Ricinus communis XP_002954286 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31565 4.6E-100 1 395 No hit NA PIRSF PIRSF000451 1.5E-193 5 395 IPR011141 Polyketide synthase, type III Pfam PF00195 2.2E-126 9 233 IPR001099 Chalcone/stilbene synthase, N-terminal SUPERFAMILY SSF53901 2.4E-78 10 237 IPR016039 Thiolase-like ProSitePatterns PS00441 NA 161 177 IPR018088 Chalcone/stilbene synthase, active site SUPERFAMILY SSF53901 3.0E-51 241 393 IPR016039 Thiolase-like Pfam PF02797 1.6E-78 244 394 IPR012328 Chalcone/stilbene synthase, C-terminal
Subcellular Localization
Localization 1 Localization ER Evidence Localization with GFP-fusion protein (GFP:cDNA) Pubmed ID 10737809
Localization 2 Localization cytosol Evidence SUBAcon Pubmed ID 23180787