Basic information
Locus name	AT5G47180
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	vesicle-associated membrane family protein / VAMP family protein; FUNCTIONS IN: structural molecule activity; LOCATED IN: plasma membrane
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function structural molecule activity
Pathway	Reactome REACT_22258
Sequence	AT5G47180.1 | Genomic | mRNA | CDS | Protein AT5G47180.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_127299	Accession Taxon NP_001030903 Arabidopsis thaliana NP_001030904 Arabidopsis thaliana NP_182039 Arabidopsis thaliana NP_199529 ( AT5G47180 ) Arabidopsis thaliana NP_567101 Arabidopsis thaliana NP_567153 Arabidopsis thaliana NP_851144 Arabidopsis thaliana CMI031C Cyanidioschyzon merolae strain 10D 183897 Chlamydomonas reinhardtii ACO62492 Micromonas sp. RCC299 NP_001053416 Oryza sativa Japonica Group NP_001061019 Oryza sativa Japonica Group NP_001061025 Oryza sativa Japonica Group NP_001065017 Oryza sativa Japonica Group NP_001065309 Oryza sativa Japonica Group 0300010318 Ostreococcus tauri e_gw1.274.12.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_440216 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_10000095 Physcomitrella patens subsp. patens 28193.m000307 Ricinus communis 29726.m003981 Ricinus communis 29916.m000532 Ricinus communis 30174.m008824 Ricinus communis 30174.m008835 Ricinus communis estExt_fgenesh1_pg.C_chr_11060 Thalassiosira pseudonana CCMP1335 XP_002956075 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF019693 2.1E-88 1 213 IPR016763 Vesicle-associated membrane protein PANTHER PTHR10809 1.7E-72 5 217 No hit NA SUPERFAMILY SSF49354 3.7E-40 5 140 IPR008962 PapD-like ProSiteProfiles PS50202 28.8 9 129 IPR000535 Major sperm protein Pfam PF00635 2.7E-29 10 111 IPR000535 Major sperm protein Coils Coil NA 156 184 No hit NA
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787