Basic information
Locus name	AT3G54300
Alias	ATVAMP727
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	VESICLE-ASSOCIATED MEMBRANE PROTEIN 727 (ATVAMP727); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vacuole organization, protein targeting to vacuole
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process vesicle-mediated transport cellular component integral to membrane
Sequence	AT3G54300.1 | Genomic | mRNA | CDS | Protein AT3G54300.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_175452	Accession Taxon NP_001078283 ( AT3G54300 ) Arabidopsis thaliana NP_190998 Arabidopsis thaliana NP_001062495 Oryza sativa Japonica Group 30155.m001606 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR21136 9.5E-112 6 235 No hit NA ProSiteProfiles PS50859 23.5 6 133 IPR010908 Longin domain SUPERFAMILY SSF64356 3.4E-24 6 139 IPR011012 Longin-like domain Pfam PF13774 8.2E-23 31 105 IPR010908 Longin domain SUPERFAMILY SSF58038 9.9E-23 144 209 No hit NA Pfam PF00957 1.4E-31 148 234 IPR001388 Synaptobrevin ProSiteProfiles PS50892 19.4 149 209 IPR001388 Synaptobrevin PRINTS PR00219 1.9E-14 154 173 IPR001388 Synaptobrevin ProSitePatterns PS00417 NA 167 186 IPR001388 Synaptobrevin PRINTS PR00219 1.9E-14 174 193 IPR001388 Synaptobrevin PRINTS PR00219 1.9E-14 212 231 IPR001388 Synaptobrevin
Subcellular Localization
Localization 1 Localization cytosol,nucleus Evidence SUBAcon Pubmed ID 23180787
Localization 2 Localization endoplasmic reticulum Evidence SUBAcon Pubmed ID 23180787