Basic information
Locus name	AT3G05970
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism:fatty acid catabolism
Effect for Senescence	Unclear
Gene Description	Long-chain-fatty-acid
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process metabolic process molecular function catalytic activity
Sequence	AT3G05970.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT3G05970.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -28.3 kcal/mol  p-value: 0.002485  position:  1616  target 5' A        U            A 3'             GA GGUGA UGAUGAAGAUGG              CU CUACU ACUACUUCUACU   miRNA  3' A  G                    5'
Ortholog Group
Ortholog Groups: OG5_126601	Accession Taxon NP_001031554 Arabidopsis thaliana NP_175368 Arabidopsis thaliana NP_176622 Arabidopsis thaliana NP_177882 Arabidopsis thaliana NP_178516 Arabidopsis thaliana NP_182246 Arabidopsis thaliana NP_192841 Arabidopsis thaliana NP_194116 Arabidopsis thaliana NP_198112 Arabidopsis thaliana NP_566265 ( AT3G05970 ) Arabidopsis thaliana NP_849934 Arabidopsis thaliana CME186C Cyanidioschyzon merolae strain 10D 113915 Chlamydomonas reinhardtii 123147 Chlamydomonas reinhardtii ACO64887 Micromonas sp. RCC299 NP_001043753 Oryza sativa Japonica Group NP_001043879 Oryza sativa Japonica Group NP_001054556 Oryza sativa Japonica Group NP_001055177 Oryza sativa Japonica Group NP_001056862 Oryza sativa Japonica Group NP_001065739 Oryza sativa Japonica Group NP_001065854 Oryza sativa Japonica Group NP_001066139 Oryza sativa Japonica Group NP_001066256 Oryza sativa Japonica Group NP_001068097 Oryza sativa Japonica Group 1200010108 Ostreococcus tauri fgenesh1_pm.C_Chr_05.0001000004 Ostreococcus tauri e_gw1.108.73.1 Physcomitrella patens subsp. patens e_gw1.113.15.1 Physcomitrella patens subsp. patens e_gw1.186.23.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_4080008 Physcomitrella patens subsp. patens estExt_Genewise1.C_4750023 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_120133 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2180009 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_470140 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_33000081 Physcomitrella patens subsp. patens 29732.m000322 Ricinus communis 29844.m003365 Ricinus communis 29851.m002473 Ricinus communis 29908.m006186 Ricinus communis 30076.m004616 Ricinus communis 30128.m008777 Ricinus communis 30190.m010831 Ricinus communis estExt_Genewise1.C_chr_130147 Thalassiosira pseudonana CCMP1335 gw1.1.110.1 Thalassiosira pseudonana CCMP1335 XP_002946900 Volvox carteri f. nagariensis XP_002947675 Volvox carteri f. nagariensis XP_002948135 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF56801 3.9E-123 74 369 No hit NA PANTHER PTHR24096 4.9E-257 81 689 No hit NA Pfam PF00501 3.4E-124 120 580 IPR000873 AMP-dependent synthetase/ligase ProSitePatterns PS00455 NA 266 277 IPR020845 AMP-binding, conserved site SUPERFAMILY SSF56801 3.9E-123 410 695 No hit NA
Subcellular Localization
Localization	peroxisome
Evidence	SUBAcon
Pubmed ID	23180787