Basic information
Locus name	AT5G16880
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	VHS domain-containing protein / GAT domain-containing protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process intracellular protein transport cellular component intracellular
Sequence	AT5G16880.1 | Genomic | mRNA | CDS | Protein AT5G16880.2 | Genomic | mRNA | CDS | Protein AT5G16880.3 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_158572	Accession Taxon NP_197190 Arabidopsis thaliana NP_850833 ( AT5G16880 ) Arabidopsis thaliana NP_001047818 Oryza sativa Japonica Group estExt_Genewise1.C_300215 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2570038 Physcomitrella patens subsp. patens 30073.m002258 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF036948 2.3E-214 1 407 IPR014645 Target of Myb protein 1 PANTHER PTHR13856 4.4E-119 38 403 No hit NA SUPERFAMILY SSF48464 5.1E-39 43 183 IPR008942 ENTH/VHS Pfam PF00790 2.3E-26 47 179 IPR002014 VHS SMART SM00288 3.4E-27 48 179 IPR018205 VHS subgroup ProSiteProfiles PS50179 38.5 55 183 IPR002014 VHS SUPERFAMILY SSF89009 9.7E-29 180 315 No hit NA ProSiteProfiles PS50909 15.2 228 315 IPR004152 GAT Pfam PF03127 1.0E-19 230 318 IPR004152 GAT
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787