Basic information
Locus name	AT5G56200
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	zinc finger (C2H2 type) family protein; FUNCTIONS IN: transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function zinc ion binding
Sequence	AT5G56200.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT5G56200.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -34.6 kcal/mol  p-value: 0.000161  position: 596  target 5' A               U     G  3'             UGAUGAUGAUGAUGA GAUGA                 ACUGCUACUACUACU CUACU      miRNA  3'                 U        5'
Ortholog Group
Ortholog Groups: OG5_156385	Accession Taxon NP_171706 Arabidopsis thaliana NP_200431 ( AT5G56200 ) Arabidopsis thaliana NP_001047640 Oryza sativa Japonica Group NP_001053504 Oryza sativa Japonica Group e_gw1.33.154.1 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_2860015 Physcomitrella patens subsp. patens 30174.m008817 Ricinus communis 50114.m000014 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11389 2.7E-21 33 433 No hit NA SUPERFAMILY SSF57667 4.9E-7 77 152 No hit NA Pfam PF13912 1.3E-4 79 99 No hit NA ProSiteProfiles PS50157 10.9 79 106 IPR007087 Zinc finger, C2H2 SMART SM00355 0.4 79 101 IPR015880 Zinc finger, C2H2-like ProSitePatterns PS00028 NA 81 101 IPR007087 Zinc finger, C2H2 ProSiteProfiles PS50157 8.7 130 152 IPR007087 Zinc finger, C2H2 SMART SM00355 4.6 130 152 IPR015880 Zinc finger, C2H2-like Pfam PF13912 0.0 132 152 No hit NA ProSitePatterns PS00028 NA 132 152 IPR007087 Zinc finger, C2H2 Coils Coil NA 291 312 No hit NA SUPERFAMILY SSF57667 1.0E-6 341 364 No hit NA Pfam PF13912 6.4E-8 342 366 No hit NA ProSiteProfiles PS50157 9.6 342 369 IPR007087 Zinc finger, C2H2 SMART SM00355 0.4 342 364 IPR015880 Zinc finger, C2H2-like ProSitePatterns PS00028 NA 344 364 IPR007087 Zinc finger, C2H2 SUPERFAMILY SSF57667 1.0E-6 406 433 No hit NA Pfam PF13912 8.3E-9 411 434 No hit NA ProSiteProfiles PS50157 9.5 411 433 IPR007087 Zinc finger, C2H2 SMART SM00355 0.4 411 433 IPR015880 Zinc finger, C2H2-like ProSitePatterns PS00028 NA 413 433 IPR007087 Zinc finger, C2H2