Basic information
Locus name	AT5G05830
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function zinc ion binding
Pathway	KEGG map00380 (EC 6.3.2.-)
Sequence	AT5G05830.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT5G05830.1  miRNA: ath-miR5658 miRNA: ath-miR5658 mfe: -27.8 kcal/mol  p-value: 0.000849  position: 64  target 5' A  G          U       C  3'             UU AUCAUCAUCA UCAUCAU                 AA UAGUAGUAGU AGUAGUA      miRNA  3' A  G                     5'
Ortholog Group
Ortholog Groups: OG5_153359	Accession Taxon NP_196202 ( AT5G05830 ) Arabidopsis thaliana NP_001055711 Oryza sativa Japonica Group 1100010280 Ostreococcus tauri gw1.184.51.1 Physcomitrella patens subsp. patens gw1.73.65.1 Physcomitrella patens subsp. patens gw1.9.147.1 Physcomitrella patens subsp. patens 27798.m000613 Ricinus communis 29751.m001817 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23012 8.5E-68 2 157 No hit NA ProSiteProfiles PS51292 18.1 71 137 IPR011016 Zinc finger, RING-CH-type SUPERFAMILY SSF57850 9.2E-10 75 132 No hit NA SMART SM00744 1.1E-18 78 131 IPR011016 Zinc finger, RING-CH-type Pfam PF12906 7.6E-11 79 130 IPR011016 Zinc finger, RING-CH-type