Basic information
Locus name	AT5G62460
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function zinc ion binding
Pathway	KEGG map00380 (EC 6.3.2.-)
Sequence	AT5G62460.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_135560	Accession Taxon NP_172878 Arabidopsis thaliana NP_178396 Arabidopsis thaliana NP_190339 Arabidopsis thaliana NP_568953 ( AT5G62460 ) Arabidopsis thaliana NP_849660 Arabidopsis thaliana NP_849929 Arabidopsis thaliana NP_850667 Arabidopsis thaliana NP_850668 Arabidopsis thaliana NP_973405 Arabidopsis thaliana NP_973406 Arabidopsis thaliana NP_973407 Arabidopsis thaliana NP_974396 Arabidopsis thaliana 151017 Chlamydomonas reinhardtii 95634 Chlamydomonas reinhardtii ACO63348 Micromonas sp. RCC299 NP_001047219 Oryza sativa Japonica Group NP_001061887 Oryza sativa Japonica Group NP_001068224 Oryza sativa Japonica Group 29813.m001487 Ricinus communis 30138.m004077 Ricinus communis estExt_fgenesh1_pg.C_chr_130014 Thalassiosira pseudonana CCMP1335 XP_002954704 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23012 4.0E-59 3 282 No hit NA ProSiteProfiles PS51292 22.1 70 130 IPR011016 Zinc finger, RING-CH-type SUPERFAMILY SSF57850 1.9E-15 75 128 No hit NA SMART SM00744 5.0E-21 77 124 IPR011016 Zinc finger, RING-CH-type Pfam PF12906 8.2E-14 78 123 IPR011016 Zinc finger, RING-CH-type Pfam PF12428 5.8E-42 129 249 IPR022143 Protein of unknown function DUF3675