Basic information
Locus name	AT5G18650
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function protein binding zinc ion binding
Sequence	AT5G18650.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128327	Accession Taxon NP_001078621 Arabidopsis thaliana NP_173325 Arabidopsis thaliana NP_177615 Arabidopsis thaliana NP_188457 Arabidopsis thaliana NP_191856 Arabidopsis thaliana NP_197366 ( AT5G18650 ) Arabidopsis thaliana NP_197683 Arabidopsis thaliana NP_197938 Arabidopsis thaliana CMM141C Cyanidioschyzon merolae strain 10D 123572 Chlamydomonas reinhardtii 98280 Chlamydomonas reinhardtii ACO70411 Micromonas sp. RCC299 NP_001043922 Oryza sativa Japonica Group NP_001044081 Oryza sativa Japonica Group NP_001050105 Oryza sativa Japonica Group NP_001056245 Oryza sativa Japonica Group NP_001064757 Oryza sativa Japonica Group NP_001066941 Oryza sativa Japonica Group gw1.11.00.262.1 Ostreococcus tauri e_gw1.150.65.1 Physcomitrella patens subsp. patens e_gw1.262.63.1 Physcomitrella patens subsp. patens e_gw1.45.32.1 Physcomitrella patens subsp. patens e_gw1.51.169.1 Physcomitrella patens subsp. patens e_gw1.77.8.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_3710003 Physcomitrella patens subsp. patens 29589.m001255 Ricinus communis 29726.m003996 Ricinus communis 29996.m000130 Ricinus communis 30066.m000728 Ricinus communis 30078.m002255 Ricinus communis 30147.m014052 Ricinus communis e_gw1.4.390.1 Thalassiosira pseudonana CCMP1335 e_gw1.4.480.1 Thalassiosira pseudonana CCMP1335 fgenesh1_pm.C_chr_5000011 Thalassiosira pseudonana CCMP1335 gw1.8.223.1 Thalassiosira pseudonana CCMP1335 XP_002949777 Volvox carteri f. nagariensis XP_002950146 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR21319 4.8E-138 1 266 No hit NA ProSiteProfiles PS51266 25.8 11 86 IPR008913 Zinc finger, CHY-type SUPERFAMILY SSF161219 5.2E-18 16 87 No hit NA Pfam PF05495 1.6E-17 18 99 IPR008913 Zinc finger, CHY-type ProSiteProfiles PS51270 34.6 88 152 IPR017921 Zinc finger, CTCHY-type SUPERFAMILY SSF161245 1.2E-19 89 146 No hit NA Pfam PF13639 1.5E-7 152 197 IPR001841 Zinc finger, RING-type SUPERFAMILY SSF57850 4.1E-10 152 202 No hit NA ProSiteProfiles PS50089 11.4 153 196 IPR001841 Zinc finger, RING-type SMART SM00184 2.7E-5 153 195 IPR001841 Zinc finger, RING-type