Basic information   
Locus name AT3G13430
OrganismArabidopsis thaliana
Taxonomic identifier[NCBI]
Function categoryTranscription regulation
Effect for Senescenceunclear
Gene Descriptionzinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding, zinc ion binding.
EvidenceGenomic evidence:microarray data [Ref 1]
References
1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology
molecular function
SequenceAT3G13430.1 | Genomic | mRNA | CDS | Protein
AT3G13430.2 | Genomic | mRNA | CDS | Protein
AT3G13430.3 | Genomic | mRNA | CDS | Protein
miRNA Interaction      
Details
target: AT3G13430.1 
miRNA: ath-miR414
miRNA: ath-miR414
mfe: -32.7 kcal/mol 
p-value: 0.000282 

position: 432 
target 5' A              U     U  3' 
           GAUGAUGGUGAUGA GGUGA     
           CUGCUACUACUACU CUACU     
miRNA  3' A              U        5' 

target: AT3G13430.2 
miRNA: ath-miR414
miRNA: ath-miR414
mfe: -32.7 kcal/mol 
p-value: 0.000323 

position: 505 
target 5' A              U     U  3' 
           GAUGAUGGUGAUGA GGUGA     
           CUGCUACUACUACU CUACU     
miRNA  3' A              U        5' 

target: AT3G13430.3 
miRNA: ath-miR414
miRNA: ath-miR414
mfe: -32.7 kcal/mol 
p-value: 0.000327 

position: 535 
target 5' A              U     U  3' 
           GAUGAUGGUGAUGA GGUGA     
           CUGCUACUACUACU CUACU     
miRNA  3' A              U        5' 
Ortholog Group      
Ortholog Groups: OG5_187094
AccessionTaxon
NP_001030687 ( AT3G13430 ) Arabidopsis thaliana
NP_187951Arabidopsis thaliana
Cross Link      
DatabaseEntry IDE-valueStartEndInterPro IDDescription
PfamPF143692.9E-12740No hitNA
PANTHERPTHR227633.5E-648315No hitNA
PfamPF136392.1E-13224266IPR001841Zinc finger, RING-type
SUPERFAMILYSSF578505.3E-20224272No hitNA
ProSiteProfilesPS5008912.2225266IPR001841Zinc finger, RING-type
SMARTSM001843.8E-7225265IPR001841Zinc finger, RING-type