Basic information
Locus name	AT3G16857
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Hormone response pathway:CK
Effect for Senescence	Unclear
Gene Description	Arabidopsis response regulators type B, ARR1.Upregulated in senescent leaves.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4):567-85
Gene Ontology	biological process phosphorelay signal transduction system regulation of transcription, DNA-dependent molecular function chromatin binding phosphorelay response regulator activity
Pathway	Reactome REACT_14797
Sequence	AT3G16857.1 | Genomic | mRNA | CDS | Protein AT3G16857.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT3G16857.1  miRNA: ath-miR167a miRNA: ath-miR167a mfe: -26.7 kcal/mol  p-value: 0.030181  position:  219  target 5' C               G C  G 3'             GGAUCG GCUGGUGG U CA              UCUAGU CGACCGUC A GU   miRNA  3' A      A        G A    5'  target: AT3G16857.1  miRNA: ath-miR167b miRNA: ath-miR167b mfe: -26.7 kcal/mol  p-value: 0.026592  position:  219  target 5' C               G C  G 3'             GGAUCG GCUGGUGG U CA              UCUAGU CGACCGUC A GU   miRNA  3' A      A        G A    5'  target: AT3G16857.1  miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -23.5 kcal/mol  p-value: 0.065052  position:  850  target 5' G    A          A    A 3'             GAGA GAGCAAGGAG UGAU              CUUU CUUGUUCUUU ACUA   miRNA  3' A    G          G      5'  target: AT3G16857.1  miRNA: ath-miR847 miRNA: ath-miR847 mfe: -30.9 kcal/mol  p-value: 0.003831  position:  645  target 5' A              A     A 3'             GUUAGGAAGAGGAG AGUGA              UAGUUCUUCUUCUC UCACU   miRNA  3' G              C       5'  target: AT3G16857.2  miRNA: ath-miR167a miRNA: ath-miR167a mfe: -26.7 kcal/mol  p-value: 0.034417  position:  322  target 5' C               G C  G 3'             GGAUCG GCUGGUGG U CA              UCUAGU CGACCGUC A GU   miRNA  3' A      A        G A    5'  target: AT3G16857.2  miRNA: ath-miR167b miRNA: ath-miR167b mfe: -26.7 kcal/mol  p-value: 0.030290  position:  322  target 5' C               G C  G 3'             GGAUCG GCUGGUGG U CA              UCUAGU CGACCGUC A GU   miRNA  3' A      A        G A    5'  target: AT3G16857.2  miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -23.5 kcal/mol  p-value: 0.073724  position:  953  target 5' G    A          A    A 3'             GAGA GAGCAAGGAG UGAU              CUUU CUUGUUCUUU ACUA   miRNA  3' A    G          G      5'  target: AT3G16857.2  miRNA: ath-miR847 miRNA: ath-miR847 mfe: -30.9 kcal/mol  p-value: 0.004490  position:  748  target 5' A              A     A 3'             GUUAGGAAGAGGAG AGUGA              UAGUUCUUCUUCUC UCACU   miRNA  3' G              C       5'
Ortholog Group
Ortholog Groups: OG5_141279	Accession Taxon NP_193346 Arabidopsis thaliana NP_566561 ( AT3G16857 ) Arabidopsis thaliana NP_850600 Arabidopsis thaliana 113139 Chlamydomonas reinhardtii ACO70013 Micromonas sp. RCC299 NP_001049427 Oryza sativa Japonica Group estExt_fgenesh1_pg.C_Chr_16.00010090 Ostreococcus tauri e_gw1.10.288.1 Physcomitrella patens subsp. patens e_gw1.16.93.1 Physcomitrella patens subsp. patens e_gw1.362.4.1 Physcomitrella patens subsp. patens 27647.m000179 Ricinus communis 29889.m003245 Ricinus communis fgenesh1_pg.C_chr_2000345 Thalassiosira pseudonana CCMP1335 XP_002958010 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PIRSF PIRSF036392 0.0 4 669 IPR017053 Response regulator, plant B-type PANTHER PTHR26402 2.7E-65 31 373 No hit NA SUPERFAMILY SSF52172 4.4E-36 35 173 IPR011006 CheY-like superfamily SMART SM00448 7.4E-31 37 149 IPR001789 Signal transduction response regulator, receiver domain ProSiteProfiles PS50110 31.6 38 153 IPR001789 Signal transduction response regulator, receiver domain Pfam PF00072 1.8E-21 39 147 IPR001789 Signal transduction response regulator, receiver domain ProSiteProfiles PS51294 11.5 234 293 IPR017930 Myb domain SUPERFAMILY SSF46689 1.6E-19 235 294 IPR009057 Homeodomain-like TIGRFAM TIGR01557 2.9E-24 237 290 IPR006447 Myb domain, plants Pfam PF00249 5.3E-11 239 289 IPR001005 SANT/Myb domain
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787