Basic information
Locus name	AT3G13445
Alias	TBP1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:RNA polymerase II transcription factor activity
Effect for Senescence	unclear
Gene Description	TATA BINDING PROTEIN 1 (TBP1); FUNCTIONS IN: RNA polymerase II transcription factor activity, binding, DNA binding; INVOLVED IN: transcription initiation from RNA polymerase II promoter, regulation of transcription, DNA-dependent
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process DNA-dependent transcription, initiation molecular function DNA binding
Sequence	AT3G13445.1 | Genomic | mRNA | CDS | Protein AT3G13445.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126912	Accession Taxon NP_175948 Arabidopsis thaliana NP_187953 ( AT3G13445 ) Arabidopsis thaliana NP_849812 Arabidopsis thaliana CMF095C Cyanidioschyzon merolae strain 10D 144556 Chlamydomonas reinhardtii NP_113071 Guillardia theta NP_113221 Guillardia theta NP_113394 Guillardia theta ACO64058 Micromonas sp. RCC299 NP_001050812 Oryza sativa Japonica Group NP_001064668 Oryza sativa Japonica Group NP_001067128 Oryza sativa Japonica Group estExt_gwp_GeneWisePlus.C_Chr_12.00010124 Ostreococcus tauri e_gw1.13.259.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_2460019 Physcomitrella patens subsp. patens 29822.m003403 Ricinus communis 29950.m001154 Ricinus communis thaps1_ua_kg.chr_14000002 Thalassiosira pseudonana CCMP1335 XP_002948268 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description Hamap MF_00408 24.8 19 196 IPR000814 TATA-box binding protein PANTHER PTHR10126 5.7E-127 19 179 IPR000814 TATA-box binding protein SUPERFAMILY SSF55945 1.4E-33 21 114 No hit NA Pfam PF00352 8.4E-32 23 105 IPR000814 TATA-box binding protein PRINTS PR00686 9.9E-69 25 40 IPR000814 TATA-box binding protein PRINTS PR00686 9.9E-69 49 68 IPR000814 TATA-box binding protein ProSitePatterns PS00351 NA 52 101 IPR000814 TATA-box binding protein PRINTS PR00686 9.9E-69 68 86 IPR000814 TATA-box binding protein SUPERFAMILY SSF55945 2.0E-25 107 187 No hit NA Pfam PF00352 1.2E-29 110 185 IPR000814 TATA-box binding protein PRINTS PR00686 9.9E-69 115 131 IPR000814 TATA-box binding protein PRINTS PR00686 9.9E-69 139 154 IPR000814 TATA-box binding protein PRINTS PR00686 9.9E-69 158 174 IPR000814 TATA-box binding protein
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787