Basic information
Locus name	AT3G12080
Alias	emb2738
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction:GTP binding
Effect for Senescence	unclear
Gene Description	embryo defective 2738 (emb2738); FUNCTIONS IN: GTP binding; INVOLVED IN: embryonic development ending in seed dormancy; LOCATED IN: chloroplast
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function GTP binding
Sequence	AT3G12080.1 | Genomic | mRNA | CDS | Protein AT3G12080.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT3G12080.1  miRNA: ath-miR5021 miRNA: ath-miR5021 mfe: -32.6 kcal/mol  p-value: 0.000019  position: 20  target 5' A                  U  3'             UUUCUUCUUCUUCUUCUC                 AAAGAAGAAGAAGAAGAG      miRNA  3' A                  U  5'  target: AT3G12080.2  miRNA: ath-miR5021 miRNA: ath-miR5021 mfe: -32.6 kcal/mol  p-value: 0.000018  position: 20  target 5' A                  U  3'             UUUCUUCUUCUUCUUCUC                 AAAGAAGAAGAAGAAGAG      miRNA  3' A                  U  5'
Ortholog Group
Ortholog Groups: OG5_128684	Accession Taxon NP_001078139 Arabidopsis thaliana NP_187815 ( AT3G12080 ) Arabidopsis thaliana NP_198812 Arabidopsis thaliana CMC059C Cyanidioschyzon merolae strain 10D 114154 Chlamydomonas reinhardtii 120661 Chlamydomonas reinhardtii NP_113427 Guillardia theta ACO70504 Micromonas sp. RCC299 NP_001042458 Oryza sativa Japonica Group NP_001068337 Oryza sativa Japonica Group 1100010231 Ostreococcus tauri e_gw1.123.40.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_3690004 Physcomitrella patens subsp. patens 28119.m000039 Ricinus communis 30063.m001416 Ricinus communis 30169.m006437 Ricinus communis e_gw1.1.208.1 Thalassiosira pseudonana CCMP1335 e_gw1.2.194.1 Thalassiosira pseudonana CCMP1335 XP_002946780 Volvox carteri f. nagariensis XP_002954559 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11649 1.4E-179 36 586 No hit NA SUPERFAMILY SSF52540 2.8E-18 138 235 IPR027417 P-loop containing nucleoside triphosphate hydrolase Hamap MF_00195 28.2 158 587 IPR016484 GTP-binding protein EngA Pfam PF01926 5.6E-21 160 307 IPR006073 GTP binding domain TIGRFAM TIGR03594 9.7E-97 252 586 IPR016484 GTP-binding protein EngA SUPERFAMILY SSF52540 6.0E-44 258 537 IPR027417 P-loop containing nucleoside triphosphate hydrolase TIGRFAM TIGR00231 2.9E-22 368 537 IPR005225 Small GTP-binding protein domain Pfam PF01926 1.9E-23 371 492 IPR006073 GTP binding domain PRINTS PR00326 1.0E-5 371 391 IPR006073 GTP binding domain PRINTS PR00326 1.0E-5 421 436 IPR006073 GTP binding domain
Subcellular Localization
Localization	plastid
Evidence	SUBAcon
Pubmed ID	23180787