Basic information
Locus name	AT3G09480
Alias	H2B
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others:DNA binding
Effect for Senescence	unclear
Gene Description	histone H2B, putative; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process nucleosome assembly cellular component nucleosome molecular function DNA binding
Sequence	AT3G09480.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_126572	Accession Taxon NP_172258 Arabidopsis thaliana NP_180440 Arabidopsis thaliana NP_181283 Arabidopsis thaliana NP_187559 ( AT3G09480 ) Arabidopsis thaliana NP_190184 Arabidopsis thaliana NP_190189 Arabidopsis thaliana NP_190933 Arabidopsis thaliana NP_195877 Arabidopsis thaliana NP_197679 Arabidopsis thaliana NP_200799 Arabidopsis thaliana CMN145C Cyanidioschyzon merolae strain 10D CMN173C Cyanidioschyzon merolae strain 10D 100005 Chlamydomonas reinhardtii 100008 Chlamydomonas reinhardtii 100162 Chlamydomonas reinhardtii 100236 Chlamydomonas reinhardtii 100672 Chlamydomonas reinhardtii 100722 Chlamydomonas reinhardtii 102205 Chlamydomonas reinhardtii 107058 Chlamydomonas reinhardtii 107697 Chlamydomonas reinhardtii 108915 Chlamydomonas reinhardtii 109944 Chlamydomonas reinhardtii 112444 Chlamydomonas reinhardtii 112576 Chlamydomonas reinhardtii 112705 Chlamydomonas reinhardtii 112775 Chlamydomonas reinhardtii 115268 Chlamydomonas reinhardtii 121856 Chlamydomonas reinhardtii 121902 Chlamydomonas reinhardtii 123644 Chlamydomonas reinhardtii 124679 Chlamydomonas reinhardtii 124894 Chlamydomonas reinhardtii 125122 Chlamydomonas reinhardtii 160509 Chlamydomonas reinhardtii 168516 Chlamydomonas reinhardtii 172560 Chlamydomonas reinhardtii 181233 Chlamydomonas reinhardtii 60 Chlamydomonas reinhardtii 648 Chlamydomonas reinhardtii 654 Chlamydomonas reinhardtii 885 Chlamydomonas reinhardtii 97627 Chlamydomonas reinhardtii 97907 Chlamydomonas reinhardtii 98035 Chlamydomonas reinhardtii 98097 Chlamydomonas reinhardtii NP_113407 Guillardia theta ACO63039 Micromonas sp. RCC299 ACO65231 Micromonas sp. RCC299 ACO69362 Micromonas sp. RCC299 NP_001042026 Oryza sativa Japonica Group NP_001042044 Oryza sativa Japonica Group NP_001042049 Oryza sativa Japonica Group NP_001042051 Oryza sativa Japonica Group NP_001042053 Oryza sativa Japonica Group NP_001044754 Oryza sativa Japonica Group NP_001056388 Oryza sativa Japonica Group NP_001062114 Oryza sativa Japonica Group e_gw1.08.00.355.1 Ostreococcus tauri e_gw1.12.00.363.1 Ostreococcus tauri estExt_Genewise1.C_370159 Physcomitrella patens subsp. patens estExt_Genewise1.C_560143 Physcomitrella patens subsp. patens estExt_Genewise1.C_980188 Physcomitrella patens subsp. patens estExt_Genewise1.C_980191 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_340142 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_98000135 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_117000001 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_201000013 Physcomitrella patens subsp. patens fgenesh1_pm.scaffold_256000008 Physcomitrella patens subsp. patens 28546.m000073 Ricinus communis 28872.m000241 Ricinus communis 28872.m000242 Ricinus communis 29589.m001271 Ricinus communis e_gw1.14.282.1 Thalassiosira pseudonana CCMP1335 e_gw1.5.554.1 Thalassiosira pseudonana CCMP1335 e_gw1.7.512.1 Thalassiosira pseudonana CCMP1335 estExt_Genewise1.C_chr_30080 Thalassiosira pseudonana CCMP1335 fgenesh1_pg.C_chr_7000330 Thalassiosira pseudonana CCMP1335 XP_002946193 Volvox carteri f. nagariensis XP_002946194 Volvox carteri f. nagariensis XP_002946213 Volvox carteri f. nagariensis XP_002947412 Volvox carteri f. nagariensis XP_002947842 Volvox carteri f. nagariensis XP_002948133 Volvox carteri f. nagariensis XP_002948276 Volvox carteri f. nagariensis XP_002948472 Volvox carteri f. nagariensis XP_002951705 Volvox carteri f. nagariensis XP_002955481 Volvox carteri f. nagariensis XP_002956800 Volvox carteri f. nagariensis XP_002956847 Volvox carteri f. nagariensis XP_002956853 Volvox carteri f. nagariensis XP_002959847 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR23428 4.3E-99 2 126 IPR000558 Histone H2B SUPERFAMILY SSF47113 2.0E-51 11 126 IPR009072 Histone-fold SMART SM00427 2.3E-71 29 125 IPR000558 Histone H2B Pfam PF00125 3.6E-21 34 102 IPR007125 Histone core PRINTS PR00621 7.7E-48 39 57 IPR000558 Histone H2B PRINTS PR00621 7.7E-48 58 78 IPR000558 Histone H2B PRINTS PR00621 7.7E-48 80 97 IPR000558 Histone H2B ProSitePatterns PS00357 NA 94 116 IPR000558 Histone H2B PRINTS PR00621 7.7E-48 97 110 IPR000558 Histone H2B PRINTS PR00621 7.7E-48 110 123 IPR000558 Histone H2B
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787