Basic information
Locus name	AT2G42010
Alias	PLDBETA1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism:phospholipase D activity
Effect for Senescence	unclear
Gene Description	PHOSPHOLIPASE D BETA 1 (PLDBETA1); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: response to cadmium ion, defense response to bacterium, incompatible interaction
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process metabolic process molecular function catalytic activity protein binding
Pathway	KEGG map00564 (EC 3.1.4.4) map00565 (EC 3.1.4.4) MetaCyc PWY-3561
Sequence	AT2G42010.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_131416	Accession Taxon NP_175666 Arabidopsis thaliana NP_175914 Arabidopsis thaliana NP_188194 Arabidopsis thaliana NP_192920 Arabidopsis thaliana NP_192921 Arabidopsis thaliana NP_192922 Arabidopsis thaliana NP_197919 Arabidopsis thaliana NP_565963 ( AT2G42010 ) Arabidopsis thaliana NP_567160 Arabidopsis thaliana NP_567989 Arabidopsis thaliana NP_849501 Arabidopsis thaliana NP_849502 Arabidopsis thaliana NP_849539 Arabidopsis thaliana NP_001042153 Oryza sativa Japonica Group NP_001048777 Oryza sativa Japonica Group NP_001051849 Oryza sativa Japonica Group NP_001054773 Oryza sativa Japonica Group NP_001058015 Oryza sativa Japonica Group NP_001058016 Oryza sativa Japonica Group NP_001058017 Oryza sativa Japonica Group NP_001059324 Oryza sativa Japonica Group NP_001063203 Oryza sativa Japonica Group NP_001063826 Oryza sativa Japonica Group NP_001065108 Oryza sativa Japonica Group e_gw1.19.181.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_80143 Physcomitrella patens subsp. patens estExt_Genewise1.C_940006 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_580068 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_100017 Physcomitrella patens subsp. patens estExt_fgenesh1_pm.C_360039 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_20288 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_3240023 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_165000063 Physcomitrella patens subsp. patens 28320.m001141 Ricinus communis 28694.m000682 Ricinus communis 28725.m000311 Ricinus communis 29784.m000369 Ricinus communis 29841.m002847 Ricinus communis 29848.m004631 Ricinus communis 30170.m014290 Ricinus communis 30174.m008942 Ricinus communis 30190.m011102 Ricinus communis thaps1_ua_kg.chr_3000222 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR18896 0.0 1 1083 IPR015679 Phospholipase D family ProSiteProfiles PS50004 11.4 270 377 IPR018029 C2 membrane targeting protein SUPERFAMILY SSF49562 1.7E-24 271 418 IPR008973 C2 calcium/lipid-binding domain, CaLB SMART SM00239 2.6E-16 274 392 IPR000008 C2 calcium-dependent membrane targeting Pfam PF00168 4.4E-23 275 376 IPR000008 C2 calcium-dependent membrane targeting SUPERFAMILY SSF56024 3.9E-29 479 636 No hit NA Pfam PF00614 2.4E-11 595 630 IPR001736 Phospholipase D/Transphosphatidylase ProSiteProfiles PS50035 10.6 595 630 IPR001736 Phospholipase D/Transphosphatidylase SMART SM00155 0.5 595 630 IPR001736 Phospholipase D/Transphosphatidylase SUPERFAMILY SSF56024 3.9E-29 664 694 No hit NA SUPERFAMILY SSF56024 1.2E-28 733 876 No hit NA SUPERFAMILY SSF56024 1.2E-28 925 1014 No hit NA ProSiteProfiles PS50035 14.7 929 956 IPR001736 Phospholipase D/Transphosphatidylase SMART SM00155 1.2E-7 929 956 IPR001736 Phospholipase D/Transphosphatidylase Pfam PF00614 2.1E-7 932 956 IPR001736 Phospholipase D/Transphosphatidylase Pfam PF12357 7.8E-33 1002 1073 IPR024632 Phospholipase D, C-terminal
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787