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Locus name | AT5G62940 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Transcription regulation:DOF |
Effect for Senescence | Unclear |
Gene Description | Upregulated in senescent leaves |
Evidence | Molecular evidence:Real-Time PCR [Ref 1] |
References | 1: Balazadeh S, Ria_o-Pachon DM, Mueller-Roeber BTranscription factors regulating leaf senescence in Arabidopsis thaliana.Plant Biol (Stuttg) 2008 Sep;10 Suppl 1:63-75 |
Gene Ontology | |
Sequence | AT5G62940.1 | Genomic | mRNA | CDS | Protein
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miRNA Interaction | |
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Details | | target: AT5G62940.1 miRNA: ath-miR854a miRNA: ath-miR854a mfe: -29.5 kcal/mol p-value: 0.010117
position: 1312 target 5' U G A 3' UCUUUUUUCUUGUC UCAUC AGGAGGAGGGAUAG AGUAG miRNA 3' G G 5'
target: AT5G62940.1 miRNA: ath-miR854b miRNA: ath-miR854b mfe: -29.5 kcal/mol p-value: 0.011572
position: 1312 target 5' U G A 3' UCUUUUUUCUUGUC UCAUC AGGAGGAGGGAUAG AGUAG miRNA 3' G G 5'
target: AT5G62940.1 miRNA: ath-miR854c miRNA: ath-miR854c mfe: -29.5 kcal/mol p-value: 0.010081
position: 1312 target 5' U G A 3' UCUUUUUUCUUGUC UCAUC AGGAGGAGGGAUAG AGUAG miRNA 3' G G 5'
target: AT5G62940.1 miRNA: ath-miR854d miRNA: ath-miR854d mfe: -29.5 kcal/mol p-value: 0.010666
position: 1312 target 5' U G A 3' UCUUUUUUCUUGUC UCAUC AGGAGGAGGGAUAG AGUAG miRNA 3' G G 5'
target: AT5G62940.1 miRNA: ath-miR854e miRNA: ath-miR854e mfe: -29.5 kcal/mol p-value: 0.011916
position: 1312 target 5' U G A 3' UCUUUUUUCUUGUC UCAUC AGGAGGAGGGAUAG AGUAG miRNA 3' G G 5'
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Ortholog Group | |
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Ortholog Groups: OG5_160244 | |
Cross Link | |
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Localization | nucleus |
Evidence | SUBAcon |
Pubmed ID | 23180787 |