Basic information
Locus name	AT2G44980
Alias	SNF2
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation
Effect for Senescence	unclear
Gene Description	transcription regulatory protein SNF2, putative; FUNCTIONS IN: transcription regulator activity, helicase activity, DNA binding, nucleic acid binding, ATP binding
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function ATP binding DNA binding helicase activity nucleic acid binding
Sequence	AT2G44980.1 | Genomic | mRNA | CDS | Protein AT2G44980.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_135107	Accession Taxon NP_182025 Arabidopsis thaliana NP_973689 ( AT2G44980 ) Arabidopsis thaliana NP_001048656 Oryza sativa Japonica Group estExt_fgenesh1_pm.C_2930006 Physcomitrella patens subsp. patens 30174.m008795 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10799 0.0 15 851 No hit NA SUPERFAMILY SSF52540 1.4E-50 29 275 IPR027417 P-loop containing nucleoside triphosphate hydrolase SMART SM00487 4.6E-28 47 241 IPR014001 Helicase, superfamily 1/2, ATP-binding domain Pfam PF00176 5.0E-62 54 349 IPR000330 SNF2-related ProSiteProfiles PS51192 18.1 64 233 IPR014001 Helicase, superfamily 1/2, ATP-binding domain SUPERFAMILY SSF52540 1.0E-58 283 548 IPR027417 P-loop containing nucleoside triphosphate hydrolase ProSiteProfiles PS51194 17.3 372 529 IPR001650 Helicase, C-terminal SMART SM00490 1.9E-19 398 482 IPR001650 Helicase, C-terminal Pfam PF00271 1.6E-11 403 482 IPR001650 Helicase, C-terminal Coils Coil NA 634 655 No hit NA SUPERFAMILY SSF52949 1.1E-26 687 851 No hit NA