Basic information
Locus name	AT5G65310
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:HB
Effect for Senescence	Unclear
Gene Description	Upregulated in senescent leaves
Evidence	Molecular evidence:Real-Time PCR [Ref 1]
References	1: Balazadeh S, Ria_o-Pachon DM, Mueller-Roeber B Transcription factors regulating leaf senescence in Arabidopsis thaliana. Plant Biol (Stuttg) 2008 Sep;10 Suppl 1:63-75
Gene Ontology	biological process regulation of transcription, DNA-dependent cellular component nucleus molecular function DNA binding sequence-specific DNA binding transcription factor activity sequence-specific DNA binding transcription regulatory region sequence-specific DNA binding
Sequence	AT5G65310.1 | Genomic | mRNA | CDS | Protein AT5G65310.2 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT5G65310.1  miRNA: ath-miR396b miRNA: ath-miR396b mfe: -23.3 kcal/mol  p-value: 0.059870  position:  1365  target 5' A   C G        A       A 3'             AAG U AAGGGGGU UGUGGAA              UUC A UUCUUUCG ACACCUU   miRNA  3'     A G                  5'  target: AT5G65310.1  miRNA: ath-miR854a miRNA: ath-miR854a mfe: -29.8 kcal/mol  p-value: 0.010852  position:  20  target 5' U    C          U      U 3'             CUCU CCUCUCUAUC CUC UC              GAGG GGAGGGAUAG GAG AG   miRNA  3'      A              U    5'  target: AT5G65310.1  miRNA: ath-miR854b miRNA: ath-miR854b mfe: -29.8 kcal/mol  p-value: 0.012285  position:  20  target 5' U    C          U      U 3'             CUCU CCUCUCUAUC CUC UC              GAGG GGAGGGAUAG GAG AG   miRNA  3'      A              U    5'  target: AT5G65310.1  miRNA: ath-miR854c miRNA: ath-miR854c mfe: -29.8 kcal/mol  p-value: 0.010792  position:  20  target 5' U    C          U      U 3'             CUCU CCUCUCUAUC CUC UC              GAGG GGAGGGAUAG GAG AG   miRNA  3'      A              U    5'  target: AT5G65310.1  miRNA: ath-miR854d miRNA: ath-miR854d mfe: -29.8 kcal/mol  p-value: 0.011465  position:  20  target 5' U    C          U      U 3'             CUCU CCUCUCUAUC CUC UC              GAGG GGAGGGAUAG GAG AG   miRNA  3'      A              U    5'  target: AT5G65310.1  miRNA: ath-miR854e miRNA: ath-miR854e mfe: -29.8 kcal/mol  p-value: 0.012670  position:  20  target 5' U    C          U      U 3'             CUCU CCUCUCUAUC CUC UC              GAGG GGAGGGAUAG GAG AG   miRNA  3'      A              U    5'  target: AT5G65310.2  miRNA: ath-miR396b miRNA: ath-miR396b mfe: -23.3 kcal/mol  p-value: 0.046012  position:  971  target 5' A   C G        A       A 3'             AAG U AAGGGGGU UGUGGAA              UUC A UUCUUUCG ACACCUU   miRNA  3'     A G                  5'
Ortholog Group
Ortholog Groups: OG5_133011	Accession Taxon NP_001032151 Arabidopsis thaliana NP_186796 Arabidopsis thaliana NP_195716 Arabidopsis thaliana NP_201334 ( AT5G65310 ) Arabidopsis thaliana NP_565536 Arabidopsis thaliana NP_001048008 Oryza sativa Japonica Group NP_001049219 Oryza sativa Japonica Group NP_001061807 Oryza sativa Japonica Group NP_001062064 Oryza sativa Japonica Group NP_001063436 Oryza sativa Japonica Group NP_001064475 Oryza sativa Japonica Group e_gw1.31.11.1 Physcomitrella patens subsp. patens e_gw1.325.18.1 Physcomitrella patens subsp. patens e_gw1.34.11.1 Physcomitrella patens subsp. patens e_gw1.431.18.1 Physcomitrella patens subsp. patens e_gw1.65.5.1 Physcomitrella patens subsp. patens e_gw1.96.4.1 Physcomitrella patens subsp. patens estExt_fgenesh2_pm.C_1080004 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_70211 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_143000038 Physcomitrella patens subsp. patens gw1.154.2.1 Physcomitrella patens subsp. patens gw1.28.15.1 Physcomitrella patens subsp. patens gw1.34.13.1 Physcomitrella patens subsp. patens gw1.4.12.1 Physcomitrella patens subsp. patens gw1.65.7.1 Physcomitrella patens subsp. patens gw1.77.4.1 Physcomitrella patens subsp. patens 29736.m002045 Ricinus communis 29822.m003350 Ricinus communis 29908.m006082 Ricinus communis 30147.m014069 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SUPERFAMILY SSF46689 2.8E-19 45 111 IPR009057 Homeodomain-like ProSiteProfiles PS50071 17.4 49 109 IPR001356 Homeodomain SMART SM00389 5.3E-18 52 113 IPR001356 Homeodomain PANTHER PTHR24326 3.3E-51 53 181 No hit NA Pfam PF00046 3.4E-16 56 107 IPR001356 Homeodomain PRINTS PR00031 7.0E-6 80 89 IPR000047 Helix-turn-helix motif ProSitePatterns PS00027 NA 84 107 IPR017970 Homeobox, conserved site PRINTS PR00031 7.0E-6 89 105 IPR000047 Helix-turn-helix motif Pfam PF02183 1.1E-17 109 151 IPR003106 Leucine zipper, homeobox-associated Coils Coil NA 122 150 No hit NA
Mutant Image
normal leaf senescence
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787