Basic information
Locus name	AT5G27070
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:MADS
Effect for Senescence	Unclear
Gene Description	Upregulated in senescent leaves
Evidence	Molecular evidence:Real-Time PCR [Ref 1]
References	1: Balazadeh S, Ria_o-Pachon DM, Mueller-Roeber B Transcription factors regulating leaf senescence in Arabidopsis thaliana. Plant Biol (Stuttg) 2008 Sep;10 Suppl 1:63-75
Gene Ontology	molecular function DNA binding protein dimerization activity
Pathway	Reactome REACT_21303
Sequence	AT5G27070.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT5G27070.1  miRNA: ath-miR858 miRNA: ath-miR858 mfe: -23.9 kcal/mol  p-value: 0.026882  position:  260  target 5' A      U       U C      G 3'             GAGGUU AGCAGAU A ACGAGA              UUCCAG UUGUCUG U UGCUUU   miRNA  3'        C                  5'
Ortholog Group
Ortholog Groups: OG5_135171	Accession Taxon NP_001119283 Arabidopsis thaliana NP_001119289 Arabidopsis thaliana NP_001119325 Arabidopsis thaliana NP_188495 Arabidopsis thaliana NP_192864 Arabidopsis thaliana NP_198039 Arabidopsis thaliana NP_198047 Arabidopsis thaliana NP_198057 Arabidopsis thaliana NP_198059 ( AT5G27070 ) Arabidopsis thaliana NP_198061 Arabidopsis thaliana NP_198110 Arabidopsis thaliana NP_198690 Arabidopsis thaliana NP_198791 Arabidopsis thaliana NP_198797 Arabidopsis thaliana NP_198823 Arabidopsis thaliana NP_198828 Arabidopsis thaliana NP_198838 Arabidopsis thaliana NP_198936 Arabidopsis thaliana NP_201336 Arabidopsis thaliana NP_680360 Arabidopsis thaliana NP_974500 Arabidopsis thaliana 27732.m000277 Ricinus communis 28966.m000534 Ricinus communis 29929.m004544 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11945 3.6E-220 5 287 No hit NA SMART SM00432 1.1E-14 6 77 IPR002100 Transcription factor, MADS-box Pfam PF00319 2.8E-16 27 76 IPR002100 Transcription factor, MADS-box ProSiteProfiles PS50066 10.1 30 78 IPR002100 Transcription factor, MADS-box SUPERFAMILY SSF55455 2.1E-14 32 112 IPR002100 Transcription factor, MADS-box
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787