Basic information
Locus name	AT2G30800
Alias	HVT1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others(helicase)
Effect for Senescence	unclear
Gene Description	HELICASE IN VASCULAR TISSUE AND TAPETUM (HVT1); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function ATP binding ATP-dependent helicase activity helicase activity nucleic acid binding
Sequence	AT2G30800.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_132087	Accession Taxon NP_172152 Arabidopsis thaliana NP_850154 ( AT2G30800 ) Arabidopsis thaliana ACO66970 Micromonas sp. RCC299 NP_001044362 Oryza sativa Japonica Group e_gw1.02.00.9.1 Ostreococcus tauri estExt_gwp_gw1.C_610184 Physcomitrella patens subsp. patens 29993.m001063 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description SMART SM00393 1.0E-23 1 81 IPR001374 Single-stranded nucleic acid binding R3H ProSiteProfiles PS51061 13.0 15 82 IPR001374 Single-stranded nucleic acid binding R3H SUPERFAMILY SSF82708 6.1E-11 23 80 No hit NA Pfam PF01424 6.0E-13 29 80 IPR001374 Single-stranded nucleic acid binding R3H PANTHER PTHR18934 0.0 30 1237 No hit NA SUPERFAMILY SSF52540 1.6E-60 182 380 IPR027417 P-loop containing nucleoside triphosphate hydrolase SMART SM00487 5.0E-26 185 380 IPR014001 Helicase, superfamily 1/2, ATP-binding domain Pfam PF00270 1.7E-9 195 349 IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal ProSiteProfiles PS51192 18.7 197 366 IPR014001 Helicase, superfamily 1/2, ATP-binding domain SUPERFAMILY SSF52540 1.6E-60 416 437 IPR027417 P-loop containing nucleoside triphosphate hydrolase SUPERFAMILY SSF48403 1.9E-9 419 509 IPR020683 Ankyrin repeat-containing domain ProSiteProfiles PS50297 12.4 450 521 IPR020683 Ankyrin repeat-containing domain Coils Coil NA 490 511 No hit NA ProSiteProfiles PS51194 13.9 537 711 IPR001650 Helicase, C-terminal SMART SM00490 4.7E-16 566 671 IPR001650 Helicase, C-terminal SUPERFAMILY SSF52540 1.6E-60 576 914 IPR027417 P-loop containing nucleoside triphosphate hydrolase Pfam PF00271 4.0E-11 582 670 IPR001650 Helicase, C-terminal Pfam PF04408 1.4E-16 734 828 IPR007502 Helicase-associated domain SMART SM00847 1.9E-20 734 829 IPR007502 Helicase-associated domain Pfam PF07717 1.3E-8 866 979 IPR011709 Domain of unknown function DUF1605
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787