Basic information
Locus name	AT2G23900
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Lipid/Carbohydrate metabolism
Effect for Senescence	unclear
Gene Description	Glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process carbohydrate metabolic process molecular function polygalacturonase activity
Sequence	AT2G23900.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_153291	Accession Taxon NP_179968 ( AT2G23900 ) Arabidopsis thaliana NP_190464 Arabidopsis thaliana NP_191708 Arabidopsis thaliana NP_194081 Arabidopsis thaliana NP_974473 Arabidopsis thaliana NP_001048813 Oryza sativa Japonica Group 30169.m006623 Ricinus communis 30174.m008646 Ricinus communis 30190.m011264 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31339 8.8E-185 9 473 No hit NA SUPERFAMILY SSF51126 3.3E-101 50 451 IPR011050 Pectin lyase fold/virulence factor Pfam PF00295 1.7E-37 143 433 IPR000743 Glycoside hydrolase, family 28 SMART SM00710 4,600.0 201 221 IPR006626 Parallel beta-helix repeat SMART SM00710 930.0 224 250 IPR006626 Parallel beta-helix repeat SMART SM00710 37.0 251 272 IPR006626 Parallel beta-helix repeat SMART SM00710 7,100.0 285 307 IPR006626 Parallel beta-helix repeat SMART SM00710 1,600.0 313 334 IPR006626 Parallel beta-helix repeat