Basic information
Locus name	AT5G16540
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:C2H2
Effect for Senescence	Unclear
Gene Description	Upregulated in senescent leaves
Evidence	Molecular evidence:Real-Time PCR [Ref 1]
References	1: Balazadeh S, Ria_o-Pachon DM, Mueller-Roeber B Transcription factors regulating leaf senescence in Arabidopsis thaliana. Plant Biol (Stuttg) 2008 Sep;10 Suppl 1:63-75
Gene Ontology	molecular function nucleic acid binding zinc ion binding
Sequence	AT5G16540.1 | Genomic | mRNA | CDS | Protein AT5G16540.2 | Genomic | mRNA | CDS | Protein AT5G16540.3 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_178358	Accession Taxon NP_568332 Arabidopsis thaliana NP_851041 ( AT5G16540 ) Arabidopsis thaliana NP_974790 Arabidopsis thaliana estExt_fgenesh1_pg.C_chr_10180 Thalassiosira pseudonana CCMP1335
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR12506 4.8E-108 1 342 No hit NA ProSiteProfiles PS50103 12.9 21 49 IPR000571 Zinc finger, CCCH-type SMART SM00356 0.0 21 48 IPR000571 Zinc finger, CCCH-type Pfam PF00642 3.0E-7 24 47 IPR000571 Zinc finger, CCCH-type SUPERFAMILY SSF90229 1.2E-5 25 49 No hit NA ProSiteProfiles PS50103 14.2 66 94 IPR000571 Zinc finger, CCCH-type SMART SM00356 2.6E-5 66 93 IPR000571 Zinc finger, CCCH-type Pfam PF00642 1.4E-9 69 93 IPR000571 Zinc finger, CCCH-type SUPERFAMILY SSF90229 4.6E-6 70 95 No hit NA ProSiteProfiles PS50103 14.2 112 140 IPR000571 Zinc finger, CCCH-type SMART SM00356 1.1E-4 112 139 IPR000571 Zinc finger, CCCH-type SUPERFAMILY SSF90229 1.4E-5 112 140 No hit NA Pfam PF00642 2.3E-9 115 139 IPR000571 Zinc finger, CCCH-type ProSiteProfiles PS50103 14.2 222 250 IPR000571 Zinc finger, CCCH-type SMART SM00356 1.6E-5 222 249 IPR000571 Zinc finger, CCCH-type Pfam PF00642 1.7E-9 223 249 IPR000571 Zinc finger, CCCH-type SUPERFAMILY SSF90229 6.0E-6 226 252 No hit NA ProSiteProfiles PS50103 15.2 268 296 IPR000571 Zinc finger, CCCH-type SMART SM00356 1.4E-7 268 295 IPR000571 Zinc finger, CCCH-type Pfam PF00642 7.3E-10 269 295 IPR000571 Zinc finger, CCCH-type SUPERFAMILY SSF90229 1.3E-5 271 295 No hit NA
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787