Leaf Senescence DataBase

Basic information

Locus name

AT2G17760

Organism

Arabidopsis thaliana

Taxonomic identifier

[NCBI]

Function category

Protein degradation/modification

Effect for Senescence

unclear

Gene Description

aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis

Evidence

Genomic evidence:microarray data [Ref 1]

References

1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston
High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.
Plant Cell 2011 Mar;23(3):873-94

Gene Ontology

biological process	proteolysis
molecular function	aspartic-type endopeptidase activity

Sequence

AT2G17760.1 | Genomic | mRNA | CDS | Protein

miRNA Interaction

Details


target: AT2G17760.1 miRNA: ath-miR5021 miRNA: ath-miR5021 mfe: -26.2 kcal/mol p-value: 0.000865 position: 1677 target 5' C A G A 3' UUUC UU UUCUUCUUCUCA AAAG AA AAGAAGAAGAGU miRNA 3' A G 5'

Ortholog Group

Ortholog Groups: OG5_170663

Cross Link

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PANTHER	PTHR13683	1.4E-143	8	513	IPR001461	Peptidase A1
SUPERFAMILY	SSF50630	5.9E-89	97	450	IPR021109	Aspartic peptidase
Pfam	PF00026	3.9E-20	105	440	IPR001461	Peptidase A1
PRINTS	PR00792	1.5E-8	110	130	IPR001461	Peptidase A1
ProSitePatterns	PS00141	NA	119	130	IPR001969	Peptidase aspartic, active site
PRINTS	PR00792	1.5E-8	324	335	IPR001461	Peptidase A1
ProSitePatterns	PS00141	NA	324	335	IPR001969	Peptidase aspartic, active site
PRINTS	PR00792	1.5E-8	421	436	IPR001461	Peptidase A1

Subcellular Localization

Localization

plasma membrane

Evidence

SUBAcon

Pubmed ID

23180787