Basic information
Locus name	AT2G04520
Alias	eIF-1A
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others(translation)
Effect for Senescence	unclear
Gene Description	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process translational initiation molecular function translation initiation factor activity
Sequence	AT2G04520.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_127127	Accession Taxon NP_178531 ( AT2G04520 ) Arabidopsis thaliana NP_198418 Arabidopsis thaliana NP_851095 Arabidopsis thaliana CMQ117C Cyanidioschyzon merolae strain 10D 141865 Chlamydomonas reinhardtii NP_113443 Guillardia theta ACO64128 Micromonas sp. RCC299 NP_001046619 Oryza sativa Japonica Group NP_001057571 Oryza sativa Japonica Group gw1.13.00.323.1 Ostreococcus tauri e_gw1.312.46.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_3120060 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_50023 Physcomitrella patens subsp. patens fgenesh1_pg.scaffold_5000026 Physcomitrella patens subsp. patens 29620.m000537 Ricinus communis fgenesh1_pm.C_chr_7000033 Thalassiosira pseudonana CCMP1335 XP_002952565 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR21668 1.4E-95 2 145 IPR001253 Translation initiation factor 1A (eIF-1A) SUPERFAMILY SSF50249 1.3E-46 2 143 IPR012340 Nucleic acid-binding, OB-fold TIGRFAM TIGR00523 1.6E-35 14 110 IPR001253 Translation initiation factor 1A (eIF-1A) Hamap MF_00216 18.6 16 110 IPR001253 Translation initiation factor 1A (eIF-1A) ProSiteProfiles PS50832 31.8 22 96 IPR006196 RNA-binding domain, S1, IF1 type SMART SM00652 6.2E-49 28 110 IPR001253 Translation initiation factor 1A (eIF-1A) Pfam PF01176 1.6E-27 30 94 IPR006196 RNA-binding domain, S1, IF1 type ProSitePatterns PS01262 NA 41 63 IPR018104 Translation initiation factor 1A (eIF-1A), conserved site
Subcellular Localization
Localization	cytosol
Evidence	SUBAcon
Pubmed ID	23180787