Basic information
Locus name	AT2G02090
Alias	ETL1
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others(helicase)
Effect for Senescence	unclear
Gene Description	ETL1; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; LOCATED IN: chloroplast
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function ATP binding DNA binding helicase activity nucleic acid binding
Sequence	AT2G02090.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT2G02090.1  miRNA: ath-miR414 miRNA: ath-miR414 mfe: -33.7 kcal/mol  p-value: 0.000493  position: 556  target 5' A                 C   G  3'             UGAUGAUGAUGAUGAGG UGA                 ACUGCUACUACUACUUC ACU      miRNA  3'                   U      5'
Ortholog Group
Ortholog Groups: OG5_129286	Accession Taxon NP_178318 ( AT2G02090 ) Arabidopsis thaliana 6783 Chlamydomonas reinhardtii ACO69579 Micromonas sp. RCC299 NP_001053578 Oryza sativa Japonica Group e_gw1.05.00.94.1 Ostreococcus tauri e_gw1.256.4.1 Physcomitrella patens subsp. patens e_gw1.259.47.1 Physcomitrella patens subsp. patens e_gw1.279.53.1 Physcomitrella patens subsp. patens 29780.m001359 Ricinus communis fgenesh1_pm.C_bd_6x46000003 Thalassiosira pseudonana CCMP1335 XP_002953611 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10799 0.0 1 739 No hit NA SUPERFAMILY SSF52540 9.9E-49 191 439 IPR027417 P-loop containing nucleoside triphosphate hydrolase SMART SM00487 3.2E-36 209 414 IPR014001 Helicase, superfamily 1/2, ATP-binding domain Pfam PF00176 8.3E-67 216 519 IPR000330 SNF2-related ProSiteProfiles PS51192 21.4 226 404 IPR014001 Helicase, superfamily 1/2, ATP-binding domain SUPERFAMILY SSF52540 9.1E-61 345 407 IPR027417 P-loop containing nucleoside triphosphate hydrolase SUPERFAMILY SSF52540 9.1E-61 579 740 IPR027417 P-loop containing nucleoside triphosphate hydrolase ProSiteProfiles PS51194 16.1 592 742 IPR001650 Helicase, C-terminal SMART SM00490 1.1E-20 618 701 IPR001650 Helicase, C-terminal Pfam PF00271 7.1E-14 627 701 IPR001650 Helicase, C-terminal