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Locus name | AT1G02340 |
Alias | HFR1 |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | |
Effect for Senescence | promote |
Gene Description | ranscription factor HFR1 (long hypocotyl in FR light1), which is the non-DNA binding atypical HLH factor |
Evidence | Genetic evidence [Ref 1] |
References | 1: Bulgakov VP, Koren OG.Basic Protein Modules Combining Abscisic Acid and Light Signaling in ArabidopsisFront Plant Sci. 2022 Jan 3;12:808960. doi: 10.3389/fpls.2021.808960. eCollection 2021. |
Gene Ontology | |
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Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) |
Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
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Details | | target: AT1G02340.1 miRNA: ath-miR826 miRNA: ath-miR826 mfe: -26.5 kcal/mol p-value: 0.013376
position: 277 target 5' A G C 3' ACG GUCUAAAAU GGGCUA UGC UAGGUUUUG CCUGAU miRNA 3' G A G 5'
target: AT1G02340.1 miRNA: ath-miR831 miRNA: ath-miR831 mfe: -25.3 kcal/mol p-value: 0.015269
position: 590 target 5' G A G G 3' AAGAAGAG ACGAG AGAU A UUCUUCUC UGCUU UCUA U miRNA 3' G A C G 5'
target: AT1G02340.1 miRNA: ath-miR837-5p miRNA: ath-miR837-5p mfe: -22.8 kcal/mol p-value: 0.047353
position: 243 target 5' A G 3' GAAA GAGCAAGAAG UGAU CUUU CUUGUUCUUU ACUA miRNA 3' A G G 5'
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Cross Link | |
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Localization 1 | Localization | nucleus | Evidence | Localization with GFP-fusion protein (GFP:cDNA) | Pubmed ID | 10737809 |
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Localization 2 | Localization | nucleus | Evidence | SUBAcon | Pubmed ID | 23180787 |
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