Basic information
Locus name	AT1G79590
Alias	SYP52
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Signal transduction
Effect for Senescence	unclear
Gene Description	SYNTAXIN OF PLANTS 52 (SYP52); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: vesicle-mediated transport; LOCATED IN: endosome membrane, vacuole
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	biological process intracellular protein transport cellular component membrane molecular function SNAP receptor activity protein binding
Pathway	Reactome REACT_11184
Sequence	AT1G79590.1 | Genomic | mRNA | CDS | Protein AT1G79590.2 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_129016	Accession Taxon NP_001031054 Arabidopsis thaliana NP_001031301 ( AT1G79590 ) Arabidopsis thaliana NP_001077546 Arabidopsis thaliana NP_563994 Arabidopsis thaliana NP_565213 Arabidopsis thaliana 189016 Chlamydomonas reinhardtii ACO65931 Micromonas sp. RCC299 NP_001045701 Oryza sativa Japonica Group NP_001061436 Oryza sativa Japonica Group 1000010007 Ostreococcus tauri e_gw1.2.284.1 Physcomitrella patens subsp. patens estExt_gwp_gw1.C_2320034 Physcomitrella patens subsp. patens 29640.m000420 Ricinus communis XP_002951465 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR12380 1.2E-153 1 229 No hit NA SUPERFAMILY SSF58038 1.2E-15 128 197 No hit NA SMART SM00397 3.3E-6 132 199 IPR000727 Target SNARE coiled-coil domain ProSiteProfiles PS50192 14.7 137 199 IPR000727 Target SNARE coiled-coil domain Pfam PF05739 9.4E-13 142 204 IPR000727 Target SNARE coiled-coil domain ProSitePatterns PS00914 NA 143 182 IPR006012 Syntaxin/epimorphin, conserved site
Subcellular Localization
Localization 1 Localization cytosol,vacuole Evidence SUBAcon Pubmed ID 23180787
Localization 2 Localization vacuole Evidence SUBAcon Pubmed ID 23180787