Basic information
Locus name	AT1G12860
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Transcription regulation:bHLH
Effect for Senescence	Unclear
Gene Description	Upregulated in senescent leaves
Evidence	Molecular evidence:Real-Time PCR [Ref 1]
References	1: Balazadeh S, Ria_o-Pachon DM, Mueller-Roeber B Transcription factors regulating leaf senescence in Arabidopsis thaliana. Plant Biol (Stuttg) 2008 Sep;10 Suppl 1:63-75
Gene Ontology	molecular function protein binding protein dimerization activity
Sequence	AT1G12860.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_153161	Accession Taxon NP_001030774 Arabidopsis thaliana NP_001030776 Arabidopsis thaliana NP_172746 ( AT1G12860 ) Arabidopsis thaliana NP_189309 Arabidopsis thaliana NP_001045272 Oryza sativa Japonica Group NP_001067987 Oryza sativa Japonica Group estExt_Genewise1.C_510113 Physcomitrella patens subsp. patens estExt_fgenesh1_pg.C_300202 Physcomitrella patens subsp. patens 30147.m014419 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR31945 0.0 31 828 No hit NA ProSiteProfiles PS50181 10.5 65 110 IPR001810 F-box domain, cyclin-like SUPERFAMILY SSF81383 1.7E-10 67 125 IPR001810 F-box domain, cyclin-like Pfam PF00646 8.1E-7 68 107 IPR001810 F-box domain, cyclin-like SMART SM00256 3.9E-8 71 111 IPR001810 F-box domain, cyclin-like TIGRFAM TIGR01640 7.7E-14 181 376 IPR017451 F-box associated interaction domain SUPERFAMILY SSF50965 1.2E-6 183 378 IPR011043 Galactose oxidase/kelch, beta-propeller ProSiteProfiles PS50888 15.9 641 690 IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain SUPERFAMILY SSF47459 1.3E-16 644 714 IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain SMART SM00353 4.2E-14 647 696 IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain Pfam PF00010 5.2E-9 648 690 IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
Subcellular Localization
Localization	nucleus
Evidence	SUBAcon
Pubmed ID	23180787