|
|
|
|
| Locus name | AT1G53160 |
| Alias | SPL4 | | Organism | Arabidopsis thaliana | | Taxonomic identifier | [NCBI] | | Function category | Transcription regulation(SBP) | | Effect for Senescence | unclear | | Gene Description | SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4 (SPL4); FUNCTIONS IN: transcription factor activity, DNA binding; INVOLVED IN: regulation of vegetative phase change, regulation of transcription | | Evidence | Genomic evidence:microarray data [Ref 1] | | References | 1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-WollastonHigh-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation.Plant Cell 2011 Mar;23(3):873-94 | | Gene Ontology | | | Sequence | AT1G53160.1 | Genomic | mRNA | CDS | Protein
AT1G53160.2 | Genomic | mRNA | CDS | Protein
|
miRNA Interaction  | |
| | Details | | target: AT1G53160.1
miRNA: ath-miR156a
miRNA: ath-miR156a
mfe: -36.1 kcal/mol
p-value: 0.000011
position: 592
target 5' C U U 3'
UGCUC CUCUCUUCUGUCA
ACGAG GAGAGAAGACAGU
miRNA 3' C U 5'
target: AT1G53160.1
miRNA: ath-miR156b
miRNA: ath-miR156b
mfe: -36.1 kcal/mol
p-value: 0.000068
position: 592
target 5' C U U 3'
UGCUC CUCUCUUCUGUCA
ACGAG GAGAGAAGACAGU
miRNA 3' C U 5'
target: AT1G53160.1
miRNA: ath-miR156c
miRNA: ath-miR156c
mfe: -36.1 kcal/mol
p-value: 0.000038
position: 592
target 5' C U U 3'
UGCUC CUCUCUUCUGUCA
ACGAG GAGAGAAGACAGU
miRNA 3' C U 5'
target: AT1G53160.1
miRNA: ath-miR156d
miRNA: ath-miR156d
mfe: -36.1 kcal/mol
p-value: 0.000041
position: 592
target 5' C U U 3'
UGCUC CUCUCUUCUGUCA
ACGAG GAGAGAAGACAGU
miRNA 3' C U 5'
target: AT1G53160.1
miRNA: ath-miR156e
miRNA: ath-miR156e
mfe: -36.1 kcal/mol
p-value: 0.000062
position: 592
target 5' C U U 3'
UGCUC CUCUCUUCUGUCA
ACGAG GAGAGAAGACAGU
miRNA 3' C U 5'
target: AT1G53160.1
miRNA: ath-miR156f
miRNA: ath-miR156f
mfe: -36.1 kcal/mol
p-value: 0.000026
position: 592
target 5' C U U 3'
UGCUC CUCUCUUCUGUCA
ACGAG GAGAGAAGACAGU
miRNA 3' C U 5'
target: AT1G53160.1
miRNA: ath-miR156g
miRNA: ath-miR156g
mfe: -35.4 kcal/mol
p-value: 0.000160
position: 592
target 5' C U A 3'
UGCUC CUCUCUUCUGUC
ACGAG GAGAGAAGACAG
miRNA 3' C U C 5'
target: AT1G53160.1
miRNA: ath-miR156i
miRNA: ath-miR156i
mfe: -42.6 kcal/mol
p-value: 0.000001
position: 591
target 5' U U 3'
CUGCUCUCUCUCUUCUGUCA
GACGAGAGAGAGAAGACAGU
miRNA 3' 5'
target: AT1G53160.1
miRNA: ath-miR156j
miRNA: ath-miR156j
mfe: -41.0 kcal/mol
p-value: 0.000005
position: 592
target 5' C U 3'
UGCUCUCUCUCUUCUGUCA
ACGAGAGAGAGAAGACAGU
miRNA 3' C 5'
|
|
| Ortholog Group | |
| | Ortholog Groups: OG5_170357 | |
| Cross Link | |
| |
| | Localization | nucleus | | Evidence | SUBAcon | | Pubmed ID | 23180787 |
|
