Basic information
Locus name	AT1G48310
Alias	CHR18
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	CHROMATIN REMODELING FACTOR18 ; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding. Gene expression increased during leaf senescence.
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function ATP binding DNA binding helicase activity nucleic acid binding
Sequence	AT1G48310.1 | Genomic | mRNA | CDS | Protein
Ortholog Group
Ortholog Groups: OG5_128295	Accession Taxon NP_175265 ( AT1G48310 ) Arabidopsis thaliana CMR070C Cyanidioschyzon merolae strain 10D 196759 Chlamydomonas reinhardtii ACO66809 Micromonas sp. RCC299 NP_001060393 Oryza sativa Japonica Group estExt_genewise1.C_Chr_14.00010041 Ostreococcus tauri estExt_fgenesh1_pm.C_1970005 Physcomitrella patens subsp. patens 29889.m003413 Ricinus communis estExt_fgenesh1_pg.C_chr_140090 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_12000085 Thalassiosira pseudonana CCMP1335 thaps1_ua_kg.chr_5000126 Thalassiosira pseudonana CCMP1335 XP_002947320 Volvox carteri f. nagariensis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR10799 7.2E-199 2 621 No hit NA ProSiteProfiles PS51467 13.1 68 142 IPR010003 HARP domain SUPERFAMILY SSF52540 2.6E-35 140 395 IPR027417 P-loop containing nucleoside triphosphate hydrolase SMART SM00487 4.8E-16 168 361 IPR014001 Helicase, superfamily 1/2, ATP-binding domain Pfam PF00176 4.1E-33 175 449 IPR000330 SNF2-related ProSiteProfiles PS51192 14.3 181 353 IPR014001 Helicase, superfamily 1/2, ATP-binding domain SUPERFAMILY SSF52540 4.6E-48 397 626 IPR027417 P-loop containing nucleoside triphosphate hydrolase ProSiteProfiles PS51194 14.9 472 624 IPR001650 Helicase, C-terminal SMART SM00490 1.2E-19 498 581 IPR001650 Helicase, C-terminal Pfam PF00271 2.5E-13 502 581 IPR001650 Helicase, C-terminal