Basic information
Locus name	AT1G34060
Organism	Arabidopsis thaliana
Taxonomic identifier	[NCBI]
Function category	Others
Effect for Senescence	unclear
Gene Description	alliinase family protein; FUNCTIONS IN: carbon-sulfur lyase activity, pyridoxal phosphate binding, catalytic activity
Evidence	Genomic evidence:microarray data [Ref 1]
References	1: Breeze E, Harrison E, McHattie S, Hughes L, Hickman R, Hill C, Kiddle S, Kim YS, Penfold CA, Jenkins D, Zhang C, Morris K, Jenner C, Jackson S, Thomas B, Tabrett A, Legaie R, Moore JD, Wild DL, Ott S, Rand D, Beynon J, Denby K, Mead A, Buchanan-Wollaston High-resolution temporal profiling of transcripts during Arabidopsis leaf senescence reveals a distinct chronology of processes and regulation. Plant Cell 2011 Mar;23(3):873-94
Gene Ontology	molecular function carbon-sulfur lyase activity
Pathway	MetaCyc PWY-5706 PWY-5707 PWY-5708
Sequence	AT1G34060.1 | Genomic | mRNA | CDS | Protein
miRNA Interaction
Details	target: AT1G34060.1  miRNA: ath-miR4239 miRNA: ath-miR4239 mfe: -29.1 kcal/mol  p-value: 0.002615  position: 1291  target 5' A                    A  3'             GAGCG GCGAAGAUAACAGG                 CUCGU CGCUUUUAUUGUUU      miRNA  3' C     A                 5'
Ortholog Group
Ortholog Groups: OG5_146412	Accession Taxon NP_174666 Arabidopsis thaliana NP_564435 ( AT1G34060 ) Arabidopsis thaliana NP_001044074 Oryza sativa Japonica Group NP_001044075 Oryza sativa Japonica Group e_gw1.88.56.1 Physcomitrella patens subsp. patens estExt_Genewise1.C_230157 Physcomitrella patens subsp. patens 29863.m001106 Ricinus communis 29863.m001107 Ricinus communis 29863.m001108 Ricinus communis 29863.m001110 Ricinus communis
Cross Link
Database Entry ID E-value Start End InterPro ID Description PANTHER PTHR11751 1.1E-291 1 463 No hit NA Pfam PF04863 2.0E-27 33 89 IPR006947 EGF-like, alliinase SUPERFAMILY SSF53383 5.9E-84 33 448 IPR015424 Pyridoxal phosphate-dependent transferase Pfam PF04864 2.2E-164 91 449 IPR006948 Allinase, C-terminal