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About
Basic information
Locus name
AT5G25190
Organism
Arabidopsis thaliana
Taxonomic identifier
[NCBI]
Function category
Transcription regulation:AP2-EREBP
Effect for Senescence
Unclear
Gene Description
Upregulated in senescent leaves
Evidence
Molecular evidence:Real-Time PCR [Ref 1]
References
1: Balazadeh S, Ria_o-Pachon DM, Mueller-Roeber B
Transcription factors regulating leaf senescence in Arabidopsis thaliana.
Plant Biol (Stuttg) 2008 Sep;10 Suppl 1:63-75
Gene Ontology
biological process
regulation of transcription, DNA-dependent
molecular function
sequence-specific DNA binding transcription factor activity
Sequence
AT5G25190.1 |
Genomic
|
mRNA
|
CDS
|
Protein
Ortholog Group
Ortholog Groups:
OG5_143085
Accession
Taxon
NP_172988
Arabidopsis thaliana
NP_197901
( AT5G25190 )
Arabidopsis thaliana
NP_001046226
Oryza sativa Japonica Group
NP_001048393
Oryza sativa Japonica Group
NP_001056981
Oryza sativa Japonica Group
NP_001058014
Oryza sativa Japonica Group
estExt_gwp_gw1.C_580005
Physcomitrella patens subsp. patens
fgenesh1_pg.scaffold_79000014
Physcomitrella patens subsp. patens
gw1.21.122.1
Physcomitrella patens subsp. patens
28320.m001139
Ricinus communis
29588.m000873
Ricinus communis
29841.m002846
Ricinus communis
29848.m004566
Ricinus communis
Cross Link
Database
Entry ID
E-value
Start
End
InterPro ID
Description
PANTHER
PTHR31194
9.6E-37
2
68
No hit
NA
Pfam
PF00847
3.5E-15
7
55
IPR001471
AP2/ERF domain
ProSiteProfiles
PS51032
20.7
7
64
IPR001471
AP2/ERF domain
SMART
SM00380
6.4E-40
7
70
IPR001471
AP2/ERF domain
SUPERFAMILY
SSF54171
1.1E-20
7
66
IPR016177
DNA-binding, integrase-type
PRINTS
PR00367
9.3E-11
8
19
IPR001471
AP2/ERF domain
PRINTS
PR00367
9.3E-11
30
46
IPR001471
AP2/ERF domain
Subcellular Localization
Localization
nucleus
Evidence
SUBAcon
Pubmed ID
23180787